View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9636_low_1 (Length: 681)
Name: NF9636_low_1
Description: NF9636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9636_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Complemental strand, 16917259 - 16916589
Alignment:
| Q |
1 |
ttggttctagcgctgttttgcttactcttaatgctattttagctgaactttctgataaagtttttgctggcaaaggggttcaagatttcttcacatgatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16917259 |
ttggttctagcgctgttttgcttactcttaatgctattttagctgaactttctgataaagtttttgctggcaaaggggttcaagatttcttcacatgatc |
16917160 |
T |
|
| Q |
101 |
gatcattcactattatattgttgtagattcaactattaatttcttgtctttcatttttgtttctgttatgttttaaagaaattcaattttgtgcgaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
16917159 |
gatcattcactattatattgttgtagattcaactattaatttcttgtctttcatttttgtttctgttatgttttaaagaaattaaattttgtgcaaataa |
16917060 |
T |
|
| Q |
201 |
ttggttattgatcaagttgcaacttcatcactaatatgattcaatagcagaaacatagnnnnnnnnnnaatgtgaatatatgatttaatagcagaatcag |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16917059 |
ttggttattgatcaagttgcaacttcgtcactaatatgattcaatagcagaaacatagttttttt----atgtgaatatatgatttaatagcagaatcag |
16916964 |
T |
|
| Q |
301 |
agtttttatgtgaatttcaaagaagacaacaaaaaaccattgtatgtttcaaatgatacannnnnnnnggtctcctatgccaattccatttgtgcatcaa |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
16916963 |
agtttttatgtgaatttcaaagaagacaacaaaaaactattgtatgtttcaaatgatacattttctttggtcttctatgccaattccatttgtgcatcaa |
16916864 |
T |
|
| Q |
401 |
tgatgattgatttcaggataggaattatgaagactaacaaggcttccccaccctgcatctaaggctgcgagaataacgagtaagccttccaacataagat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16916863 |
tgatgattgatttcaggataggaattatgaagactaacaaggcttccccaccctgcatctaaggctgcgagaataacgagtaagccttccaacataagat |
16916764 |
T |
|
| Q |
501 |
ccaggcttagctttgatcatgtccttatttgagaatggtctgttagtcagctcagctccgctttgtctgaaaaatgctccgttcaggtacaagtcgttga |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16916763 |
ccaggcttagctttgatcatgtccttatttgagaatggtctgttaatcagctcagctccgctttgtctgaaaaatgctccgttcaggtacaagtcgttga |
16916664 |
T |
|
| Q |
601 |
ttgatctccattgccaggttttccactctgcctctggtactaacgtcctctttgttatcttcatcaacaccaaac |
675 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16916663 |
ttgatctccattgccaggttttccactctgcctctggtactaacgtcctctttgttatcttcatcaacaccaaac |
16916589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 386 - 671
Target Start/End: Complemental strand, 16912475 - 16912190
Alignment:
| Q |
386 |
ccatttgtgcatcaatgatgattgatttcaggataggaattatgaagactaacaaggcttccccaccctgcatctaaggctgcgagaataacgagtaagc |
485 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||| | |||||||||||||||| |
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| T |
16912475 |
ccatttgtgcatcaatgatgattgatttcaggaagggaattttgaagactaacaaggtttccccactatgcatctaaggcttccagaataacgagtaagc |
16912376 |
T |
|
| Q |
486 |
cttccaacataagatccaggcttagctttgatcatgtccttatttgagaatggtctgttagtcagctcagctccgctttgtctgaaaaatgctccgttca |
585 |
Q |
| |
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||||||||||||| ||| ||| ||| ||||||||||||||| ||||||||||||||| ||| ||||| ||| | ||||||||||||||||||||||| |
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| T |
16912375 |
cttccaacataagttccgggcctagatttgatcatgtcctttcttgagaatggtctgtctttcaactcaggtcctccttgtctgaaaaatgctccgttca |
16912276 |
T |
|
| Q |
586 |
ggtacaagtcgttgattgatctccattgccaggttttccactctgcctctggtactaacgtcctctttgttatcttcatcaacacc |
671 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||| ||| ||| ||| || ||||||||||||||||||||||||| |
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| T |
16912275 |
ggtacacgtcgttgattgatctccattgccaggatttccacactgactcgtctacgtactccctctttgttatcttcatcaacacc |
16912190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 625
Target Start/End: Original strand, 25006399 - 25006431
Alignment:
| Q |
593 |
gtcgttgattgatctccattgccaggttttcca |
625 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
25006399 |
gtcgttgattgatctccattgccaggttttcca |
25006431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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