View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9636_low_13 (Length: 224)

Name: NF9636_low_13
Description: NF9636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9636_low_13
NF9636_low_13
[»] chr6 (10 HSPs)
chr6 (15-209)||(7564749-7564943)
chr6 (15-208)||(1459540-1459733)
chr6 (15-208)||(1470922-1471115)
chr6 (15-209)||(370783-370977)
chr6 (94-209)||(176272-176387)
chr6 (117-209)||(1442106-1442198)
chr6 (113-209)||(1453838-1453934)
chr6 (113-209)||(1465530-1465626)
chr6 (155-205)||(9819831-9819881)
chr6 (156-205)||(9703888-9703937)
[»] chr7 (2 HSPs)
chr7 (15-209)||(3926918-3927112)
chr7 (155-209)||(1078158-1078212)
[»] chr4 (2 HSPs)
chr4 (116-208)||(55419742-55419834)
chr4 (160-209)||(22672125-22672174)
[»] scaffold0044 (1 HSPs)
scaffold0044 (150-207)||(89137-89194)
[»] chr3 (18 HSPs)
chr3 (155-209)||(2442038-2442092)
chr3 (150-207)||(2456243-2456300)
chr3 (160-208)||(3754604-3754652)
chr3 (150-205)||(9608346-9608401)
chr3 (150-207)||(771499-771556)
chr3 (160-209)||(4142132-4142181)
chr3 (160-209)||(4157942-4157991)
chr3 (152-207)||(2644362-2644417)
chr3 (152-207)||(7324431-7324486)
chr3 (154-205)||(13498222-13498273)
chr3 (160-209)||(803216-803265)
chr3 (160-209)||(1007465-1007514)
chr3 (160-209)||(1022493-1022542)
chr3 (150-207)||(2631351-2631408)
chr3 (160-209)||(2696730-2696779)
chr3 (160-208)||(2459279-2459327)
chr3 (155-203)||(2502147-2502195)
chr3 (155-207)||(2659152-2659204)
[»] chr2 (7 HSPs)
chr2 (160-209)||(7160752-7160801)
chr2 (160-209)||(7168688-7168737)
chr2 (166-209)||(6538844-6538887)
chr2 (160-218)||(7156181-7156239)
chr2 (150-207)||(33026651-33026708)
chr2 (166-218)||(7174362-7174414)
chr2 (160-208)||(36577370-36577418)
[»] chr5 (4 HSPs)
chr5 (160-208)||(11081817-11081865)
chr5 (152-205)||(20292991-20293044)
chr5 (160-209)||(23766860-23766909)
chr5 (160-209)||(23816708-23816757)
[»] chr1 (1 HSPs)
chr1 (156-209)||(51381453-51381506)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 7564943 - 7564749
Alignment:
Q  15 attctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttgacgaacgtctgcgttactttagcttaggggtttgta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  7564943 attctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttcaccaacgtctgcgttactttagcttaggggtttgta 7564844  T
Q  115 gggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7564843 gggattgcttatgggtccttgctcacactacaacttttttgaatatttgggttatgaaggattatggaaacaaggattcttggactaaattgttc 7564749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 1459733 - 1459540
Alignment:
Q  15 attctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttgacgaacgtctgcgttactttagcttaggggtttgta 114  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||  |||||||| | || |||| ||||| | |||||||||| ||||||| ||    
T  1459733 attctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttata 1459634  T
Q  115 gggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgtt 208  Q
    |||||| |||||||||||||||||| || | | ||||||||||||||||||||||||| |||| ||||||||| || |||||||||||||||||    
T  1459633 gggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 1459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 1471115 - 1470922
Alignment:
Q  15 attctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttgacgaacgtctgcgttactttagcttaggggtttgta 114  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||| ||||| ||||||| | | || |||| ||||||| |||||||||| ||||||| ||    
T  1471115 attctttctcttaatttaggaaacgagtcttatcaagagattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttcta 1471016  T
Q  115 gggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgtt 208  Q
    |||||| ||||||| |||||||||| || | | ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  1471015 gggattacttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 370977 - 370783
Alignment:
Q  15 attctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttgacgaacgtctgcgttactttagcttaggggtttgta 114  Q
    |||||||| ||||||||||  || |||| |||||||||||||| |||||| ||||||||| | || |||| ||||| | | ||   ||| | ||||| ||    
T  370977 attctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttcta 370878  T
Q  115 gggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    |||||||||||||| |||||||||| |||| ||||||| |||   |||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  370877 gggattgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaattgttc 370783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 176272 - 176387
Alignment:
Q  94 actttagcttaggggtttgtagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattc 193  Q
    |||| ||||| ||||||| |||||||||| |||||||||||||||| ||   |||||||||||||||||||  |||||| |||||||||||||| |||||    
T  176272 acttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagattc 176371  T
Q  194 ttggactaaattgttc 209  Q
    ||||||||||||||||    
T  176372 ttggactaaattgttc 176387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 1442198 - 1442106
Alignment:
Q  117 gattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    |||||||||||| ||||||||||||    |||| |||||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  1442198 gattgcttatgcatccttgctcaaaacggaactattttggatacatgggttatgaaggattatggaattaaagattcttggactaaattgttc 1442106  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 1453934 - 1453838
Alignment:
Q  113 tagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    |||||||||||||||| ||||||||||  |||     | ||||||||| |||||||||||| ||||||||||||| || ||||||| ||||||||||    
T  1453934 tagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc 1453838  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 1465626 - 1465530
Alignment:
Q  113 tagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    |||||||||||||||| ||||||||||  |||     | ||||||||| |||||||||||| ||||||||||||| || ||||||| ||||||||||    
T  1465626 tagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc 1465530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 9819881 - 9819831
Alignment:
Q  155 ggatatttgggttatgaaggattatggaaataaggattcttggactaaatt 205  Q
    |||||||||| |||||||||| ||||||||||  || ||||||||||||||    
T  9819881 ggatatttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 9703937 - 9703888
Alignment:
Q  156 gatatttgggttatgaaggattatggaaataaggattcttggactaaatt 205  Q
    ||||||||| |||||||||| ||||||||||  |||| ||||||||||||    
T  9703937 gatatttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 3926918 - 3927112
Alignment:
Q  15 attctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttgacgaacgtctgcgttactttagcttaggggtttgta 114  Q
    |||||||| ||||||||||| |||||||| |||||||||||||  | ||| |||| |||| |||| || |   | | |  ||| | ||||||||||| ||    
T  3926918 attctttctcttgatttaggaaacgagtcctatcaagagatttcacggcccgattttggtcttgatgatccggttcatatcttcaccttaggggtttcta 3927017  T
Q  115 gggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
     ||||||||| || ||||||| | | |||  |||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  3927018 aggattgcttgtgtgtccttgtttacactgaaactttgttgggtatttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 1078212 - 1078158
Alignment:
Q  155 ggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    |||| |||||||||||||||| ||||||||||  || || |||||||||||||||    
T  1078212 ggatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttc 1078158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 55419742 - 55419834
Alignment:
Q  116 ggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgtt 208  Q
    |||||||||||||||| ||||||| || |   ||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  55419742 ggattgcttatgcgtcgttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 22672174 - 22672125
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  22672174 tttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttc 22672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 89137 - 89194
Alignment:
Q  150 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 207  Q
    ||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  89137 ttttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 2442038 - 2442092
Alignment:
Q  155 ggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    |||| ||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  2442038 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 2442092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 2456243 - 2456300
Alignment:
Q  150 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 207  Q
    |||| |||| |||||||||||||||| ||||||||||| || ||||||||||||||||    
T  2456243 ttttgggatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 3754604 - 3754652
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgtt 208  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  3754604 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 9608401 - 9608346
Alignment:
Q  150 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaatt 205  Q
    ||||| ||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  9608401 ttttttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 771556 - 771499
Alignment:
Q  150 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 207  Q
    |||| |||| |||||||||||||||| ||||||||||  || ||||||||||||||||    
T  771556 ttttgggatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 4142181 - 4142132
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||| |||||||||| ||||||||||| || ||||||||||||||||||    
T  4142181 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 4142132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 4157991 - 4157942
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||| |||||||||| ||||||||||| || ||||||||||||||||||    
T  4157991 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 4157942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 2644417 - 2644362
Alignment:
Q  152 tttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 207  Q
    ||||||| ||||| |||||||||| ||||||||| | || ||||||||||||||||    
T  2644417 tttggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 7324486 - 7324431
Alignment:
Q  152 tttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 207  Q
    ||||||| ||||| |||||||||| || |||||||| || ||||||||||||||||    
T  7324486 tttggatgtttggattatgaaggactacggaaataaagagtcttggactaaattgt 7324431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 13498222 - 13498273
Alignment:
Q  154 tggatatttgggttatgaaggattatggaaataaggattcttggactaaatt 205  Q
    ||||| ||||| |||||||||| ||||||||||| || ||||||||||||||    
T  13498222 tggatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 803265 - 803216
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||||||||||| || ||||||||||| || ||||||||||| ||||||    
T  803265 tttgggttatgaaagaatatggaaataaagagtcttggactaagttgttc 803216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 1007465 - 1007514
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||||| |||||||| ||||||||||| || || |||||||||||||||    
T  1007465 tttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttc 1007514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 1022493 - 1022542
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||||| |||||||| ||||||||||| || || |||||||||||||||    
T  1022493 tttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttc 1022542  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 2631351 - 2631408
Alignment:
Q  150 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 207  Q
    |||||| || ||||| |||||||||| ||||||||| | || ||||||||||||||||    
T  2631351 tttttgaatgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 2696779 - 2696730
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||| |||||||||| ||||||||||| || ||||||| ||||||||||    
T  2696779 tttggattatgaaggaatatggaaataaagagtcttggattaaattgttc 2696730  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 2459279 - 2459327
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgtt 208  Q
    ||||| |||||||||| ||||||||||| || |||||||| ||||||||    
T  2459279 tttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 2502147 - 2502195
Alignment:
Q  155 ggatatttgggttatgaaggattatggaaataaggattcttggactaaa 203  Q
    |||| ||||| |||||||||| |||||||||||||| | ||||||||||    
T  2502147 ggatgtttggattatgaaggagtatggaaataaggagttttggactaaa 2502195  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 2659204 - 2659152
Alignment:
Q  155 ggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 207  Q
    |||| ||||| |||||||||| ||||||||| | || ||||||||||||||||    
T  2659204 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2659152  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 7160801 - 7160752
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  7160801 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 7168737 - 7168688
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  7168737 tttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 6538844 - 6538887
Alignment:
Q  166 ttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttc 6538887  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 7156239 - 7156181
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttctgtgctcct 218  Q
    ||||| |||||||||| ||||||||| | ||||||||| ||||||||||| ||| ||||    
T  7156239 tttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttcct 7156181  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 33026651 - 33026708
Alignment:
Q  150 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 207  Q
    ||||||||| |||||||||||||| | |||||||||||  | |||||||||| |||||    
T  33026651 tttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 33026708  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 7174414 - 7174362
Alignment:
Q  166 ttatgaaggattatggaaataaggattcttggactaaattgttctgtgctcct 218  Q
    |||||||||| ||||||||| | ||||||||||||| ||||||| ||| ||||    
T  7174414 ttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttcct 7174362  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 36577370 - 36577418
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgtt 208  Q
    ||||| |||||||||| ||||||||||| || ||||||| |||||||||    
T  36577370 tttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 11081817 - 11081865
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgtt 208  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  11081817 tttgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 20292991 - 20293044
Alignment:
Q  152 tttggatatttgggttatgaaggattatggaaataaggattcttggactaaatt 205  Q
    ||||||| ||||| |||||||||| ||||||| ||| || ||||||||||||||    
T  20292991 tttggatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 23766909 - 23766860
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23766909 tttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23766860  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 23816757 - 23816708
Alignment:
Q  160 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23816757 tttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23816708  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 51381506 - 51381453
Alignment:
Q  156 gatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 209  Q
    ||||||||| ||||||| || ||||||||| | || ||||||||||||||||||    
T  51381506 gatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttc 51381453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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