View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9638_1 (Length: 361)
Name: NF9638_1
Description: NF9638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9638_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 34260068 - 34260413
Alignment:
| Q |
16 |
aactgatctttttccttgctacattggctgaaatatgatccagaggttgaaggtgtttttgattccacaaatttttcctttgatgtaccaattctcacaa |
115 |
Q |
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| T |
34260068 |
aactgatctttttccttgctacattggctgaaatatgatccagaggttgaaggtgtttttgattccacaaatttttcctttgatgtaccaattctcacaa |
34260167 |
T |
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| Q |
116 |
atatgttagacaaacacttgacaagatcctctgaaactctatttggtgtgctatgaacttctgacactttattatctgttggtgaatttgaggaactatg |
215 |
Q |
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| T |
34260168 |
atatgttagacaaacacttgacaagatcctctgaaactctatttggtgtgctatgaacttctgacactttattatctgttggtgaatttgaggaactatg |
34260267 |
T |
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| Q |
216 |
tgccctttcatgttctgataatctccattccagctaggcaaccaaaacaaaatgattaaacaaaaaattgttgagaagatagcacgatcaatcatatcac |
315 |
Q |
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| T |
34260268 |
tgccctttcatgttctgataatctccattccagctaggcaaccaaaacaaaatgattaaacaaaaaattgttgagaagatagcacaatcaatcatatcat |
34260367 |
T |
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| Q |
316 |
agagtaactaacatgtttgaaactatgaagcatagacactcattag |
361 |
Q |
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| T |
34260368 |
agactaactaacatgtttgaaactatgaagcatagacactcattag |
34260413 |
T |
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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 6566320 - 6566238
Alignment:
| Q |
105 |
aattctcacaaatatgttagacaaacacttgacaagatcctctgaaactctatttggtgtgctatgaacttctgacactttat |
187 |
Q |
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| T |
6566320 |
aattctcataaatatgctacacaaacacttgactatatcctctgaaactctatttggtgtgctatcaacttctaacaccttat |
6566238 |
T |
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