View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9638_high_1 (Length: 282)

Name: NF9638_high_1
Description: NF9638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9638_high_1
NF9638_high_1
[»] chr2 (3 HSPs)
chr2 (12-233)||(44741886-44742107)
chr2 (252-282)||(30514699-30514729)
chr2 (253-281)||(11377419-11377447)
[»] chr3 (4 HSPs)
chr3 (12-133)||(26373552-26373673)
chr3 (252-281)||(20846769-20846798)
chr3 (167-228)||(27054292-27054352)
chr3 (184-228)||(20846704-20846748)
[»] chr4 (3 HSPs)
chr4 (148-223)||(5122195-5122270)
chr4 (183-228)||(7784351-7784396)
chr4 (183-223)||(51907300-51907340)
[»] scaffold0042 (1 HSPs)
scaffold0042 (12-133)||(30934-31055)
[»] chr1 (3 HSPs)
chr1 (147-212)||(39158132-39158197)
chr1 (252-282)||(9961943-9961973)
chr1 (183-223)||(17989273-17989313)
[»] scaffold0664 (1 HSPs)
scaffold0664 (252-282)||(6276-6306)
[»] chr6 (4 HSPs)
chr6 (252-282)||(892101-892131)
chr6 (253-282)||(12108338-12108367)
chr6 (253-282)||(32190441-32190470)
chr6 (132-224)||(22413982-22414072)
[»] chr7 (4 HSPs)
chr7 (253-282)||(7528957-7528986)
chr7 (252-281)||(23675672-23675701)
chr7 (253-281)||(2734632-2734660)
chr7 (184-228)||(40849089-40849133)
[»] chr5 (5 HSPs)
chr5 (253-282)||(22553653-22553682)
chr5 (253-282)||(25715546-25715575)
chr5 (253-282)||(40331240-40331269)
chr5 (254-282)||(31075379-31075407)
chr5 (132-228)||(31075417-31075511)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 44742107 - 44741886
Alignment:
Q  12 agcacagaccaccaacacaaacggttccaaacgcgcttgaattctgatcaagggatga-tccaacacacgttagtaaccaaacagcccttacgggttaaa 110  Q
    ||||| ||||||||||||||||||||||| |||||||||||  | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44742107 agcacggaccaccaacacaaacggttccagacgcgcttgaacccagatcaagggatgagtccaacacacgttagtaaccaaacagcccttacgggttaaa 44742008  T
Q  111 aagaaccataccctttggggtttttaaatttacttccaacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatg 210  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44742007 a-gaaccataccctttggggtttttaaatttacttccaacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatg 44741909  T
Q  211 gacataaagtaatcatatcctat 233  Q
    |||||||||||||||||||||||    
T  44741908 gacataaagtaatcatatcctat 44741886  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 282
Target Start/End: Complemental strand, 30514729 - 30514699
Alignment:
Q  252 ttaagattttatcattctctaaaagttcaag 282  Q
    |||||||||||||||||||||||||||||||    
T  30514729 ttaagattttatcattctctaaaagttcaag 30514699  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 11377447 - 11377419
Alignment:
Q  253 taagattttatcattctctaaaagttcaa 281  Q
    |||||||||||||||||||||||||||||    
T  11377447 taagattttatcattctctaaaagttcaa 11377419  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 26373552 - 26373673
Alignment:
Q  12 agcacagaccaccaacacaaacggttccaaacgcgcttgaattctgatcaagggatga-tccaacacacgttagtaaccaaacagcccttacgggttaaa 110  Q
    |||||||||||||||||||| | ||| || ||| |  ||||  | ||| | ||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  26373552 agcacagaccaccaacacaaccagtttcagacgtgtctgaacccagattatgggatgagtccaacacacgttagtaaccaaacagcccttacgggtt-ta 26373650  T
Q  111 aagaaccataccctttggggttt 133  Q
    |||||||||||||||| ||||||    
T  26373651 aagaaccataccctttcgggttt 26373673  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 20846769 - 20846798
Alignment:
Q  252 ttaagattttatcattctctaaaagttcaa 281  Q
    ||||||||||||||||||||||||||||||    
T  20846769 ttaagattttatcattctctaaaagttcaa 20846798  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 27054292 - 27054352
Alignment:
Q  167 catccaacgatgttcacaacaatataaaccaaattaaaaacatggacataaagtaatcatat 228  Q
    |||||||| || ||| |||| |||||||||||||| |||| ||||||| |||||||||||||    
T  27054292 catccaacaatattcccaactatataaaccaaatt-aaaatatggacaaaaagtaatcatat 27054352  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 20846704 - 20846748
Alignment:
Q  184 aacaatataaaccaaattaaaaacatggacataaagtaatcatat 228  Q
    ||||| |||||||||||||||||| |||||| |||||||| ||||    
T  20846704 aacaacataaaccaaattaaaaacgtggacacaaagtaattatat 20846748  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 5122270 - 5122195
Alignment:
Q  148 aacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatggacataaagtaat 223  Q
    ||||||||| |||||||  ||| | ||||||||  ||||||||||||||||||||||||| |||||| ||||||||    
T  5122270 aacattacaatttcattttcattctacgatgtttccaacaatataaaccaaattaaaaacgtggacaaaaagtaat 5122195  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 7784396 - 7784351
Alignment:
Q  183 caacaatataaaccaaattaaaaacatggacataaagtaatcatat 228  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||    
T  7784396 caacaacatagaccaaattaaaaacatggacaaaaagtaatcatat 7784351  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 51907300 - 51907340
Alignment:
Q  183 caacaatataaaccaaattaaaaacatggacataaagtaat 223  Q
    |||||||||| ||||||||||||||||||||| | ||||||    
T  51907300 caacaatatagaccaaattaaaaacatggacaaagagtaat 51907340  T

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Target: scaffold0042 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 31055 - 30934
Alignment:
Q  12 agcacagaccaccaacacaaacggttccaaacgcgcttgaattctgatcaagggatga-tccaacacacgttagtaaccaaacagcccttacgggttaaa 110  Q
    |||||| ||||||||||||| | ||| || ||| |  |||| || ||||| ||||||| || |||||||||||||||||||||| ||||||  ||||  |    
T  31055 agcacaaaccaccaacacaaccagtttcagacgtgtctgaactcagatcatgggatgagtctaacacacgttagtaaccaaacaacccttataggtt-ta 30957  T
Q  111 aagaaccataccctttggggttt 133  Q
    |||||||||||||||| ||||||    
T  30956 aagaaccataccctttcgggttt 30934  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 39158197 - 39158132
Alignment:
Q  147 caacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatgga 212  Q
    |||||||||| |||||||  |||| ||| |||||| |||||| ||||||||||||||||| |||||    
T  39158197 caacattacaatttcattttcatctaacaatgttcccaacaacataaaccaaattaaaaagatgga 39158132  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 282
Target Start/End: Complemental strand, 9961973 - 9961943
Alignment:
Q  252 ttaagattttatcattctctaaaagttcaag 282  Q
    |||||||||||||||||||||||||||||||    
T  9961973 ttaagattttatcattctctaaaagttcaag 9961943  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 17989273 - 17989313
Alignment:
Q  183 caacaatataaaccaaattaaaaacatggacataaagtaat 223  Q
    |||||| |||||||||||||||||| |||||| ||||||||    
T  17989273 caacaacataaaccaaattaaaaacgtggacacaaagtaat 17989313  T

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Target: scaffold0664 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 6276 - 6306
Alignment:
Q  252 ttaagattttatcattctctaaaagttcaag 282  Q
    |||||||||||||||||||||||||||||||    
T  6276 ttaagattttatcattctctaaaagttcaag 6306  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 282
Target Start/End: Complemental strand, 892131 - 892101
Alignment:
Q  252 ttaagattttatcattctctaaaagttcaag 282  Q
    |||||||||||||||||||||||||||||||    
T  892131 ttaagattttatcattctctaaaagttcaag 892101  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 12108367 - 12108338
Alignment:
Q  253 taagattttatcattctctaaaagttcaag 282  Q
    ||||||||||||||||||||||||||||||    
T  12108367 taagattttatcattctctaaaagttcaag 12108338  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 32190470 - 32190441
Alignment:
Q  253 taagattttatcattctctaaaagttcaag 282  Q
    ||||||||||||||||||||||||||||||    
T  32190470 taagattttatcattctctaaaagttcaag 32190441  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 22413982 - 22414072
Alignment:
Q  132 ttttaaatttacttccaacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatggacataaagtaatc 224  Q
    |||||||||| | |||||||||||| |||||||  |||||||| |||||| |||| | ||| |||| ||| ||||| |||||| |||||||||    
T  22413982 ttttaaattt-catccaacattacaatttcattctcatccaacaatgttcccaactacatagaccagatt-aaaacgtggacaaaaagtaatc 22414072  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 7528986 - 7528957
Alignment:
Q  253 taagattttatcattctctaaaagttcaag 282  Q
    ||||||||||||||||||||||||||||||    
T  7528986 taagattttatcattctctaaaagttcaag 7528957  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 23675672 - 23675701
Alignment:
Q  252 ttaagattttatcattctctaaaagttcaa 281  Q
    ||||||||||||||||||||||||||||||    
T  23675672 ttaagattttatcattctctaaaagttcaa 23675701  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 2734632 - 2734660
Alignment:
Q  253 taagattttatcattctctaaaagttcaa 281  Q
    |||||||||||||||||||||||||||||    
T  2734632 taagattttatcattctctaaaagttcaa 2734660  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 40849089 - 40849133
Alignment:
Q  184 aacaatataaaccaaattaaaaacatggacataaagtaatcatat 228  Q
    ||||| |||||||||||||||||  ||||||||||||||| ||||    
T  40849089 aacaacataaaccaaattaaaaatgtggacataaagtaattatat 40849133  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 22553653 - 22553682
Alignment:
Q  253 taagattttatcattctctaaaagttcaag 282  Q
    ||||||||||||||||||||||||||||||    
T  22553653 taagattttatcattctctaaaagttcaag 22553682  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 25715546 - 25715575
Alignment:
Q  253 taagattttatcattctctaaaagttcaag 282  Q
    ||||||||||||||||||||||||||||||    
T  25715546 taagattttatcattctctaaaagttcaag 25715575  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 40331269 - 40331240
Alignment:
Q  253 taagattttatcattctctaaaagttcaag 282  Q
    ||||||||||||||||||||||||||||||    
T  40331269 taagattttatcattctctaaaagttcaag 40331240  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 31075407 - 31075379
Alignment:
Q  254 aagattttatcattctctaaaagttcaag 282  Q
    |||||||||||||||||||||||||||||    
T  31075407 aagattttatcattctctaaaagttcaag 31075379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 31075511 - 31075417
Alignment:
Q  132 ttttaaatttacttccaacattacattttcattgacatccaacgatgttcacaacaatataaaccaaattaaaaacatggacataaagtaatcatat 228  Q
    |||||||||| | ||||| |||||| ||| |||  |||| ||| |||||| |||||| ||| |||||||||||||| | |||| |||||||||||||    
T  31075511 ttttaaattt-catccaatattacaattttattttcatctaacaatgttcccaacaacatagaccaaattaaaaacgttgaca-aaagtaatcatat 31075417  T

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