View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9639_high_3 (Length: 364)
Name: NF9639_high_3
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9639_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 353
Target Start/End: Original strand, 48092441 - 48092759
Alignment:
| Q |
22 |
gtgcatggtaggtgcccttgtctgtctcatagattaactgctctttttcttctttttgttttatgatagagaaagagaagtgttctttttatctcatctc |
121 |
Q |
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| T |
48092441 |
gtgcatggtaggtgcccttgtctgtctcatagattaactgctctttttcttcgttttgttttatgatagagaaagagaagtgttctttttatctcatctc |
48092540 |
T |
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| Q |
122 |
atagatctcaataaatgaggcatttcggatgtaatgataatgtagtgtatggtgggtatgttagaatcacgacgattcatacctaccatgatactaaaca |
221 |
Q |
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| T |
48092541 |
atagatctcaataaatgaggcatttcggatgtaatgttaatgtagtgtatggtgggtatgttagaatcacgaccattcacacctaccatgatactaaaca |
48092640 |
T |
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| Q |
222 |
caaacatatatagtttattaagatatagnnnnnnnaatttgttgttttatgaagtagttagctagcgtgttgattgatatatatatgttagaataataat |
321 |
Q |
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|||||||||||||||| || | | | |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48092641 |
caaacatatatagtttttt----ttttgttg-------ttgttgttgtatgaagtagttagctagcgtgttgattg--atatatatgttagaataataat |
48092727 |
T |
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| Q |
322 |
aacatttgaattttgaaatattgttgtgatgt |
353 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48092728 |
aacatttgaattttgaaatattgttgtgatgt |
48092759 |
T |
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