View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9639_low_11 (Length: 360)
Name: NF9639_low_11
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9639_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 33357032 - 33357391
Alignment:
| Q |
1 |
taacactccctaatcaataatcaaaaaacaagtattcttcattagaatctaattgaatgataataccaaacataaagtggaaacaaaattgtgaaaagaa |
100 |
Q |
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| T |
33357032 |
taacactccctaatcaataatcaaaaaacaagtattcttcattagaatctaattgaatgataataccaaacataaagtggaaacaaaattgtgaaaagaa |
33357131 |
T |
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| Q |
101 |
atcattatctttacctataaaatacttgttgagcacattatcagatgcatatttgcgctcaatctgtaacatttgaccaattttctcctcaagagtcatt |
200 |
Q |
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| T |
33357132 |
atcattatctttacctataaaatacttgttgagcacattatcagatgcatatttgcgctcaatctgtaacatttgaccaattttctcctcaagagtcatt |
33357231 |
T |
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| Q |
201 |
cttctaataagttcctcaacccttatatcaattgactcattagggttcttatacttcatcatgtcttctgactccaataaaccaacccaattacttaaga |
300 |
Q |
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| T |
33357232 |
ctactaataagatcctcaacccttatatcaattgactcattagggttcttatacttcatcatgtcttctgtctccaataaaccagcccaattacttaata |
33357331 |
T |
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| Q |
301 |
gccaaaatccttccaaaaagattggaattttaaccattttagcgccgaatctaattcaac |
360 |
Q |
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| T |
33357332 |
gccaaaatcctaccaaaaagattggaattttagccattttagcaccgaatctaattcaac |
33357391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 33348882 - 33349207
Alignment:
| Q |
1 |
taacactccctaatcaataatcaaaaaacaagtattcttcattagaatctaattgaatgataataccaaacataaagtggaaacaaaattgtgaaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
33348882 |
taacactccctaatcaataatcaaaaaacaagtatttttcattagaatctaattgaatgataatacctaacataaagtggaaacaaaattgtaaaaagaa |
33348981 |
T |
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| Q |
101 |
atcattatctttacctataaaatacttgttgagcacattatcagatgcatatttgcgctcaatctgtaacatttgaccaattttctcctcaagagtcatt |
200 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33348982 |
at--------------ataaaatacttgatgagcacattatcagatgcatatttacgctcaatctgtaacatttgaccaattttctcctcaagagtcatt |
33349067 |
T |
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| Q |
201 |
cttctaataagttcctcaacccttatatcaattgactcattagggttcttatacttcatcatgtcttctgactccaataaaccaacccaattacttaaga |
300 |
Q |
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|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| | |
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| T |
33349068 |
ctactaataagatcctcaacccttacatcaattgactcattagggttcttatacttcatcaagtcttctgcctccaataaaccagcccaattacttaata |
33349167 |
T |
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| Q |
301 |
gccaaaatccttccaaaaagattggaattttaaccatttt |
340 |
Q |
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| T |
33349168 |
gccaaaaccctaccaaaaagattggaattttttccatttt |
33349207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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