View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9639_low_13 (Length: 325)
Name: NF9639_low_13
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9639_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 27440661 - 27440365
Alignment:
| Q |
14 |
aggaaatattttgcgaaagaattacaataaattattggatactataagttttgggaaatatctgacgatacgtgtatgatgctcttccattttgaagcaa |
113 |
Q |
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| T |
27440661 |
aggaaatattttgcgaaagaattacaataaattattggatactataagttttgggaaatatctgacgatacgtgtatgatgctcttccattttgaagcaa |
27440562 |
T |
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| Q |
114 |
ctgaggcataatgaatcaaatcaagtagtactaaattcatatacctggttaactgcaggagcaatttcggcattttctaagagcatggagagctttttga |
213 |
Q |
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| T |
27440561 |
ctgaggcataatgaatcaaatcaagtagtactaaattcatatacctggttaactgcaggagcaatttcggcattttctaagagcatggagagctttttga |
27440462 |
T |
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| Q |
214 |
taccaaagttgctgacaccaatagactttgctatgcccaatctataacaatcttccatagcttcccatgttccttttatgtcaaaaggagttgtatc |
310 |
Q |
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| T |
27440461 |
taccaaagttgctgacaccaatagactttgctatgcccaatctataacaatcttccatagattcccatgttccttttatgtcaaaaggaattgtatc |
27440365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 123 - 298
Target Start/End: Complemental strand, 27429020 - 27428845
Alignment:
| Q |
123 |
aatgaatcaaatcaagtagtactaaattcatatacctggttaactgcaggagcaatttcggcattttctaagagcatggagagctttttgataccaaagt |
222 |
Q |
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| T |
27429020 |
aatgaatcaaatcaactagtgctaaattcttttacctgattaactgcaggagcgatttcggcattttctaagagtatggagagctttttgacaccaaagt |
27428921 |
T |
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| Q |
223 |
tgctgacaccaatagactttgctatgcccaatctataacaatcttccatagcttcccatgttccttttatgtcaaa |
298 |
Q |
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| T |
27428920 |
tactgacaccaatagactttgctaggcccaatctataacattcttccatagcttcccatgttccttttatatcaaa |
27428845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 154 - 302
Target Start/End: Complemental strand, 27443442 - 27443294
Alignment:
| Q |
154 |
atacctggttaactgcaggagcaatttcggcattttctaagagcatggagagctttttgataccaaagttgctgacaccaatagactttgctatgcccaa |
253 |
Q |
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||||||| |||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
27443442 |
atacctgattaactgcaggatagattttggcactttcgaagagcatggagagctttttgataccaaagttgctaacaccaatagactttgctaagcccaa |
27443343 |
T |
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| Q |
254 |
tctataacaatcttccatagcttcccatgttccttttatgtcaaaagga |
302 |
Q |
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| T |
27443342 |
tctataacaatattccatagcttcccatgttccttttatatcaaaagga |
27443294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 27418373 - 27418325
Alignment:
| Q |
250 |
ccaatctataacaatcttccatagcttcccatgttccttttatgtcaaa |
298 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
27418373 |
ccaatctataacaatcttccgtagcttcccatgttccttttatatcaaa |
27418325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 26933160 - 26933256
Alignment:
| Q |
202 |
agagctttttgataccaaagttgctgacaccaatagactttgctatgcccaatctataacaatcttccatagcttcccatgttccttttatgtcaaa |
298 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| |||| ||| |||||| | |||||||||||| ||| |||||||| |||||||||||| |
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| T |
26933160 |
agagctttttgatgccaaagttgctaacaccaatagacttggctaagcctaatctaaatcaatcttccataactttccatgttcgttttatgtcaaa |
26933256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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