View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9639_low_14 (Length: 314)
Name: NF9639_low_14
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9639_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 7899084 - 7899392
Alignment:
| Q |
1 |
agtttgtgtcaaaaggaaaggtttgttgtagtgttggcagcaccaacttatggtatgaagtttgtcaagcacaaacttaaacataggagaaagctgaagt |
100 |
Q |
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| T |
7899084 |
agtttgtgtcaaaaggaaaggtttgttgtagtgttggcagcaccaacttatggtatgaagtttgtcaagcacaaacttaaacataggagaaagctgaagt |
7899183 |
T |
|
| Q |
101 |
cccacttcgaatattctccaacagtagagatgatgtgtagattccatcatgtgagttgagtaagcaaaactcattcattaacata------------ctt |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7899184 |
cccacttcgaatattctccaacagtagagatgatgtgtagattccatcatgtgagttgagtaagcaaaactcattcattaacatacttgttaacatcctt |
7899283 |
T |
|
| Q |
189 |
attatatgaataatcgatgagatgttgttgtttgctattt--nnnnnnnnngtgaaaatgttagtttatgagctatatttattgatccatgatcttttat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7899284 |
attatatgaataatcgatgagatgttgttgtttgctatttaaaaaaaaaaagtgaaaatgttaatttatgagctatatttattgatccatgatcttttat |
7899383 |
T |
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| Q |
287 |
attgtattt |
295 |
Q |
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||||||||| |
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| T |
7899384 |
attgtattt |
7899392 |
T |
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