View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9639_low_15 (Length: 310)
Name: NF9639_low_15
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9639_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 33816925 - 33816644
Alignment:
| Q |
18 |
ttagttatatcatgaattgaaaactccaattcttttcctgaaatcaagttcaacttctccaatatcatgatcatgttggtcgaaacctcttatttgggaa |
117 |
Q |
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| T |
33816925 |
ttagttatatcatgaattgaaaactccaattcttttcctgaaatcaagttcaacttctccaatatcatgatcatcttggtcgaaacctcttatttgggaa |
33816826 |
T |
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| Q |
118 |
agtataagtgtaacatgtaattgttcatgtattcaattagaag-acnnnnnnnnncgctctagttggtggtttaatcaatcaaggtgtggcgggtttgtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33816825 |
agtataagtgtaacatgtaattgttcatgtattcaattagaagttttttttctttctctctagttggtggtttaatcaatcaaggtgtggcgggtttgtt |
33816726 |
T |
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| Q |
217 |
gccttaattccaattaattgtattaaggtgcaattaatattctattgtgtcctataagtatattgaaaatattatggaccta |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33816725 |
gccttaattccaattaattgtattaaggtgcaattaatattctattgtgtcttataagtatattgaaaatattatggaccta |
33816644 |
T |
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