View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9639_low_17 (Length: 306)

Name: NF9639_low_17
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9639_low_17
NF9639_low_17
[»] chr8 (8 HSPs)
chr8 (18-301)||(23381292-23381575)
chr8 (18-301)||(23347644-23347930)
chr8 (84-138)||(15808883-15808940)
chr8 (84-138)||(17656616-17656673)
chr8 (84-138)||(23567484-23567541)
chr8 (76-140)||(1672912-1672979)
chr8 (84-140)||(35448599-35448658)
chr8 (84-135)||(185882-185936)
[»] scaffold0516 (1 HSPs)
scaffold0516 (76-140)||(1229-1296)
[»] scaffold0249 (1 HSPs)
scaffold0249 (76-140)||(23540-23607)
[»] chr7 (6 HSPs)
chr7 (76-140)||(5728861-5728928)
chr7 (84-138)||(44426596-44426653)
chr7 (76-134)||(46004343-46004404)
chr7 (76-137)||(44426780-44426844)
chr7 (84-140)||(7843515-7843574)
chr7 (76-140)||(32604717-32604784)
[»] chr4 (9 HSPs)
chr4 (76-140)||(8165758-8165825)
chr4 (84-138)||(25715716-25715773)
chr4 (84-138)||(54895402-54895459)
chr4 (76-137)||(36309598-36309662)
chr4 (76-137)||(53865224-53865288)
chr4 (84-134)||(53526253-53526306)
chr4 (84-140)||(33883290-33883349)
chr4 (76-135)||(25715644-25715706)
chr4 (76-135)||(54895564-54895626)
[»] chr6 (4 HSPs)
chr6 (84-138)||(22857666-22857723)
chr6 (76-137)||(10698576-10698640)
chr6 (76-140)||(21384785-21384852)
chr6 (76-140)||(25119102-25119169)
[»] chr5 (12 HSPs)
chr5 (76-140)||(15059614-15059682)
chr5 (84-138)||(20134388-20134445)
chr5 (76-140)||(20134195-20134262)
chr5 (76-136)||(39861579-39861642)
chr5 (76-138)||(16552245-16552310)
chr5 (76-134)||(22830769-22830830)
chr5 (84-138)||(39086515-39086572)
chr5 (84-138)||(39861769-39861826)
chr5 (76-140)||(3340760-3340827)
chr5 (84-136)||(11660971-11661026)
chr5 (76-140)||(22695521-22695588)
chr5 (77-140)||(39086688-39086754)
[»] chr3 (7 HSPs)
chr3 (84-140)||(8036796-8036855)
chr3 (76-140)||(19012543-19012610)
chr3 (84-140)||(50416476-50416535)
chr3 (84-138)||(36185894-36185951)
chr3 (84-138)||(50416553-50416610)
chr3 (76-137)||(36185725-36185789)
chr3 (112-145)||(11065425-11065458)
[»] chr1 (4 HSPs)
chr1 (76-135)||(17893073-17893135)
chr1 (84-138)||(32143758-32143815)
chr1 (84-137)||(42134122-42134178)
chr1 (76-133)||(45849111-45849171)
[»] chr2 (5 HSPs)
chr2 (84-138)||(31783791-31783848)
chr2 (84-138)||(42364490-42364547)
chr2 (84-137)||(30777294-30777350)
chr2 (84-140)||(12449050-12449109)
chr2 (76-140)||(15150272-15150339)
[»] scaffold0102 (1 HSPs)
scaffold0102 (76-140)||(15572-15639)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 23381575 - 23381292
Alignment:
Q  18 catgcacatcattagatactttagcaccaaacaaatctatccaagatggtgagactttactcaccgaaaccatttctggatttattcagagtgcaggatt 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  23381575 catgcacatcattagatactttagcaccaaacaaatctattcaagatggtgagactttactcaccgaaaccatttctgaatttattcagggtgcaggatt 23381476  T
Q  118 ttcttatgcaccataaccgcagcttttagtttcatcaaatggaacatttgaggttggtttcatcactccaagagattcaacaaatctatattttcgtata 217  Q
    |||||||||||||||||||||   ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  23381475 ttcttatgcaccataaccgcaatctttagtttcatcagatggaatatttgaggttggtttcatcagtccaagagattcaacaaatctatattttagtata 23381376  T
Q  218 tggttaaaaaatgtgacccacaccacttcagaaaaattcagaaggattcttgaaactgaactcaaatggtgttcctatgcttct 301  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23381375 tagttaaaaaatgtgacccacaccacttcagaaaaattcagaaggattcttgaaactgaactcaaatggtgttcttatgcttct 23381292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 23347644 - 23347930
Alignment:
Q  18 catgcacatcattagatactttagcaccaaacaaatctatccaagatggtgagactttactcaccgaaaccatttctggatttattcagagtgca---gg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| || ||   ||    
T  23347644 catgcacatcattagatactttagcaccaaacaaatctatccaaaatggtgagactttactcacagaaaccatttctggatttatgcagggttcataagg 23347743  T
Q  115 attttcttatgcaccataaccgcagcttttagtttcatcaaatggaacatttgaggttggtttcatcactccaagagattcaacaaatctatattttcgt 214  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  23347744 attttcttatgcaccataaccgcagcctttagtttcatcagatgtaacatttgaggttggtttcatcagtccaagagattcaacaaatctatattttggt 23347843  T
Q  215 atatggttaaaaaatgtgacccacaccacttcagaaaaattcagaaggattcttgaaactgaactcaaatggtgttcctatgcttct 301  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  23347844 atatggttcaaaaatgtgaccaacaccacttcagaaaaattcagaaggattcttgaaactgaactcaaatggtgttcttatacttct 23347930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 15808940 - 15808883
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||| |||||   ||||||||||||||||||||||||||    
T  15808940 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccgca 15808883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 17656673 - 17656616
Alignment:
Q  84 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||||||||   ||||||| |||||||||||||||||||    
T  17656673 aaaccatttctggatttatgcagagtgcataaggatttccttatgcaccataaccgca 17656616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 23567541 - 23567484
Alignment:
Q  84 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||||||||   ||||||| |||||||||||||||||||    
T  23567541 aaaccatttctggatttatgcagagtgcataaggatttccttatgcaccataaccgca 23567484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 1672912 - 1672979
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| ||||||||||||||| |||||    
T  1672912 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataacggcagc 1672979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 35448599 - 35448658
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  35448599 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 35448658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 185936 - 185882
Alignment:
Q  84 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataacc 135  Q
    |||||||||||| |||||| ||||||||   ||||||| ||||||||||||||||    
T  185936 aaaccatttctgaatttatgcagagtgcataaggatttccttatgcaccataacc 185882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 1229 - 1296
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| |||||||||||||||||||||    
T  1229 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 1296  T

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Target: scaffold0249 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 23607 - 23540
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  23607 actcacggaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 23540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 5728861 - 5728928
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| ||| |||||   | ||||||||||||||||||||||||||    
T  5728861 actcacagaaaccatttctggatttatgcagggtgcataagaattttcttatgcaccataaccgcagc 5728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 44426653 - 44426596
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  44426653 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 44426596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 46004404 - 46004343
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataac 134  Q
    |||||| |||||||||||||||||||| ||||||||   |||||||  ||||||||||||||    
T  46004404 actcacagaaaccatttctggatttatgcagagtgcataaggatttcgttatgcaccataac 46004343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 44426780 - 44426844
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgc 137  Q
    |||||| |||||||||||||||||||| ||| ||||   | ||||| ||||||||||||||||||    
T  44426780 actcacagaaaccatttctggatttatgcagggtgcataaagatttccttatgcaccataaccgc 44426844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 7843574 - 7843515
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    ||||||||||||||||||| ||| |||||   |||||||||||  |||||||||||||||    
T  7843574 aaaccatttctggatttatgcagcgtgcataaggattttcttagacaccataaccgcagc 7843515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 32604784 - 32604717
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgcag---gattttcttatgcaccataaccgcagc 140  Q
    |||||| ||||||||||||| |||||| ||| |||||    |||||||||||||||||||| ||||||    
T  32604784 actcacagaaaccatttctgaatttatgcagggtgcataaagattttcttatgcaccataaacgcagc 32604717  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 8165825 - 8165758
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  8165825 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 8165758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 25715716 - 25715773
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||| |||||   ||||||||||||||||||||||||||    
T  25715716 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccgca 25715773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 54895459 - 54895402
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||| |||||   ||||||||||||||||||||||||||    
T  54895459 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccgca 54895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 36309598 - 36309662
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgc 137  Q
    |||||| |||||||||||| ||||||| ||| |||||   |||||||||||||||||||||||||    
T  36309598 actcacagaaaccatttctagatttatgcagggtgcataaggattttcttatgcaccataaccgc 36309662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 53865224 - 53865288
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgc 137  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| ||||||||||||||||||    
T  53865224 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgc 53865288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 53526306 - 53526253
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataac 134  Q
    ||||||||||||||||||| || ||||||   ||||||||||||||||||||||    
T  53526306 aaaccatttctggatttatgcaaagtgcataaggattttcttatgcaccataac 53526253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 33883349 - 33883290
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||||||||| |||||| ||| |||||   |||||| |||||||||||||||||||||    
T  33883349 aaaccatttctgaatttatacagggtgcataaggatttccttatgcaccataaccgcagc 33883290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 25715706 - 25715644
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataacc 135  Q
    |||||| |||||||||| ||||||||| ||| |||||   |||||| ||||||||||||||||    
T  25715706 actcacagaaaccatttttggatttatgcagggtgcataaggatttccttatgcaccataacc 25715644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 54895564 - 54895626
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataacc 135  Q
    |||||| |||||||||| ||||||||| ||| |||||   |||||| ||||||||||||||||    
T  54895564 actcacagaaaccatttttggatttatgcagggtgcataaggatttccttatgcaccataacc 54895626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 22857666 - 22857723
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||| |||||   ||||||||||||||||||||||||||    
T  22857666 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccgca 22857723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 10698640 - 10698576
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgc 137  Q
    |||||| |||||||||||| ||||||| ||| |||||   |||||| ||||||||||||||||||    
T  10698640 actcacagaaaccatttcttgatttatgcagggtgcacaaggatttccttatgcaccataaccgc 10698576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 21384852 - 21384785
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| |||  |||   || |||| |||||||||||||||||||||    
T  21384852 actcacagaaaccatttctggatttatgcaggatgcataagaatttccttatgcaccataaccgcagc 21384785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 25119169 - 25119102
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||| ||||||||||||| |||||| ||| |||||   | |||| |||||||||||||||||||||    
T  25119169 actcacagaaaccatttctgaatttatgcagggtgcataagaatttccttatgcaccataaccgcagc 25119102  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 15059614 - 15059682
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca----ggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| ||| |||||    |||||| |||||||||||||||||||||    
T  15059614 actcacagaaaccatttctggatttatgcagggtgcataagggatttccttatgcaccataaccgcagc 15059682  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 20134388 - 20134445
Alignment:
Q  84 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||||||||   ||||||| |||||||||||||||||||    
T  20134388 aaaccatttctggatttatgcagagtgcataaggatttccttatgcaccataaccgca 20134445  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 20134262 - 20134195
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| |||  ||||   |||||| |||||||||||||||||||||    
T  20134262 actcacagaaaccatttctggatttatgcaggctgcataaggatttccttatgcaccataaccgcagc 20134195  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 39861642 - 39861579
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccg 136  Q
    ||||||||||||||||||||||||||| ||| ||||   ||||||| ||||||| |||||||||    
T  39861642 actcaccgaaaccatttctggatttatgcagggtgcataaggatttccttatgccccataaccg 39861579  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 16552310 - 16552245
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    |||||| ||||||||||||| |||||| ||| |||||   |||||| |||||||||||||||||||    
T  16552310 actcacagaaaccatttctgaatttatgcagggtgcatacggatttccttatgcaccataaccgca 16552245  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 22830769 - 22830830
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataac 134  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| |||||||||||||||    
T  22830769 actcacagaaaccatttctggatttatgcagtgtgcataaggatttccttatgcaccataac 22830830  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 39086572 - 39086515
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    |||||||||||| |||||| ||| |||||   ||||||||||||||||||||||||||    
T  39086572 aaaccatttctgaatttatgcagggtgcataaggattttcttatgcaccataaccgca 39086515  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 39861769 - 39861826
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  39861769 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 39861826  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 3340760 - 3340827
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||| ||||||||| || ||||||   |||||| |||| ||||||||||||||||    
T  3340760 actcacagaaaccatttatggatttatacatagtgcataaggatttccttacgcaccataaccgcagc 3340827  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 11660971 - 11661026
Alignment:
Q  84 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccg 136  Q
    ||||||||||||||||||| ||| ||||   ||||||| |||||||||||||||||    
T  11660971 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 11661026  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 22695521 - 22695588
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||| ||||| |||||||||||||| ||  |||||   |||||| |||||||||||||||||||||    
T  22695521 actcacagaaactatttctggatttatgcaaggtgcataaggatttccttatgcaccataaccgcagc 22695588  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 39086688 - 39086754
Alignment:
Q  77 ctcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    ||||| |||||||||||| ||||||| || ||||||   |||||| ||||||||||||||| |||||    
T  39086688 ctcacagaaaccatttctagatttatacatagtgcataaggatttccttatgcaccataactgcagc 39086754  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 8036855 - 8036796
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  8036855 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 8036796  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 19012543 - 19012610
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| ||| ||||   || |||| |||||||||||||||||||||    
T  19012543 actcacagaaaccatttctggatttatgcagggtgcataagaatttccttatgcaccataaccgcagc 19012610  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 50416535 - 50416476
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  50416535 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 50416476  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 36185894 - 36185951
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  36185894 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 36185951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 50416553 - 50416610
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  50416553 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 50416610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 36185789 - 36185725
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgc 137  Q
    |||||| |||||||||||||||||||| |||  |||   ||||||| ||||||||||||||||||    
T  36185789 actcacagaaaccatttctggatttatgcaggatgcataaggatttccttatgcaccataaccgc 36185725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 11065458 - 11065425
Alignment:
Q  112 aggattttcttatgcaccataaccgcagctttta 145  Q
    ||||||||||||||||||||||||||| ||||||    
T  11065458 aggattttcttatgcaccataaccgcacctttta 11065425  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 17893135 - 17893073
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataacc 135  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| ||||||||||||||||    
T  17893135 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataacc 17893073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 32143758 - 32143815
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||| ||||||| |||||||||   |||||| |||||||||||||||||||    
T  32143758 aaaccatttctagatttatgcagagtgcataaggatttccttatgcaccataaccgca 32143815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 42134122 - 42134178
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgc 137  Q
    ||||||||||||||||||| ||| |||||   |||||| ||||||||||||||||||    
T  42134122 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgc 42134178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 45849171 - 45849111
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataa 133  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| ||||||||||||||    
T  45849171 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 45849111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 31783848 - 31783791
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  31783848 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 31783791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 42364547 - 42364490
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 138  Q
    |||||||||||| |||||| ||| |||||   ||||||||||||||||||||||||||    
T  42364547 aaaccatttctgaatttatgcagggtgcataaggattttcttatgcaccataaccgca 42364490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 30777350 - 30777294
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgc 137  Q
    ||||||||||||||||||| ||| |||||   ||||||| |||||||||||||||||    
T  30777350 aaaccatttctggatttatgcagggtgcataaggatttttttatgcaccataaccgc 30777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 12449109 - 12449050
Alignment:
Q  84 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||||||||| |||||| ||| |||||   |||||| |||||||||||||||||||||    
T  12449109 aaaccatttctgaatttatgcagtgtgcataaggatttccttatgcaccataaccgcagc 12449050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 15150272 - 15150339
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||| |||||| |||||| |||  ||||   ||||||||||||||||||||||||||||    
T  15150272 actcacagaaaccttttctgaatttatgcaggatgcataaggattttcttatgcaccataaccgcagc 15150339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 15639 - 15572
Alignment:
Q  76 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 140  Q
    |||||| |||||||||||||||||||| ||||||||   || |  | |||||||||||||||||||||    
T  15639 actcacagaaaccatttctggatttatgcagagtgcataagaaaatccttatgcaccataaccgcagc 15572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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