View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9639_low_22 (Length: 246)
Name: NF9639_low_22
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9639_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 24165101 - 24165317
Alignment:
| Q |
18 |
gaaatggatgctttaatactggttggttgtctattgtgtcgcttttgaccttgttttttatgactgaccctctatcagtagatgttgatcttctaactgg |
117 |
Q |
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| T |
24165101 |
gaaatggatgctttaatactggttggttgtctgttgtgtcgcttttgaccttgttttttatgactgaccctctatcggtagatgttgatcttctaactgg |
24165200 |
T |
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| Q |
118 |
aggcgacggtgatcttccttttcctgagcccgctaacttttcttcggtgagaagggacatttttggcatggactccttgtccataaatgccgagggaaac |
217 |
Q |
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| T |
24165201 |
aggcgacggtgatcttccttttcctgagcccgctaacttttcttcggtgagaagggacatttttggcatggactccttgtccataaatgccgagggaaac |
24165300 |
T |
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| Q |
218 |
cttgacctcctttgctt |
234 |
Q |
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| T |
24165301 |
cttgacctcctttgctt |
24165317 |
T |
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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 42232841 - 42233035
Alignment:
| Q |
37 |
tggttggttgtctattgtgtcgcttttgaccttgttttttatgactgaccctctatcagtagatgttgatcttctaactggaggcgacggtgatcttcct |
136 |
Q |
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||||||||| |||| ||||| ||||| |||| |||| ||||| || ||||||||||||||| ||||||| |||| |||||| || ||||| || || |
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| T |
42232841 |
tggttggttttctagattgtcgattttggtcttgcttttaatgacagaacctctatcagtagatattgatctcctaattggaggtgatggtgacctgccc |
42232940 |
T |
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| Q |
137 |
tttcctgagcccgctaacttttcttcggtgagaagggacatttttggcatggactccttgtccataaatgccgagggaaaccttgacctcctttg |
231 |
Q |
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| T |
42232941 |
ctccctgtgctcactgacttttcttcagacagaagagacatttttggtatggagtccttgtccataaatgttgagggaaatcttggccttctttg |
42233035 |
T |
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