View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9639_low_23 (Length: 242)

Name: NF9639_low_23
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9639_low_23
NF9639_low_23
[»] chr4 (3 HSPs)
chr4 (1-225)||(18927911-18928135)
chr4 (1-160)||(28001879-28002040)
chr4 (95-225)||(20900719-20900849)
[»] chr8 (2 HSPs)
chr8 (1-225)||(18540725-18540946)
chr8 (150-222)||(12539016-12539087)
[»] scaffold0294 (1 HSPs)
scaffold0294 (2-217)||(18803-19020)
[»] chr2 (4 HSPs)
chr2 (2-225)||(17824659-17824881)
chr2 (1-225)||(17694382-17694606)
chr2 (1-225)||(34604892-34605118)
chr2 (81-225)||(24488569-24488713)
[»] chr7 (1 HSPs)
chr7 (104-222)||(9415730-9415848)
[»] chr3 (1 HSPs)
chr3 (121-220)||(23909570-23909669)
[»] chr5 (1 HSPs)
chr5 (135-228)||(24140167-24140260)
[»] chr6 (2 HSPs)
chr6 (126-221)||(10916791-10916886)
chr6 (95-145)||(21352695-21352745)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 18928135 - 18927911
Alignment:
Q  1 ccctaaaatcaaccagattacggtgcgggtcgagggtcacacgaggtccgggggttgatcacgcccacgcaagccaaaggcagctccccaggaccgagga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||||||    
T  18928135 ccctaaaatcaaccagattacggtgcgggtcgagggtaacatgaggtccgggggttgaccacgcccacacaagccgaaggcagctccccgggaccgagga 18928036  T
Q  101 ttacccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18928035 ttacccacgtccgtaccaacaggtacgattgttaggattaggtttgtcagccaagccctatgtaacccctatttatacccaggaatcagccttgggtcag 18927936  T
Q  201 gtatgacacttcttaccctaaactt 225  Q
    || ||||||||||||||||||||||    
T  18927935 gtgtgacacttcttaccctaaactt 18927911  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 28001879 - 28002040
Alignment:
Q  1 ccctaaaatcaaccagattacggtgcgggtcgagggt--cacacgaggtccgggggttgatcacgcccacgcaagccaaaggcagctccccaggaccgag 98  Q
    |||||||||| || |||||||||||| ||  || |||  ||||||| ||||  ||||||| ||||| ||||| || | || ||||||||| |||  | ||    
T  28001879 ccctaaaatccactagattacggtgcaggctgatggttacacacgatgtccaagggttgaccacgctcacgctagtcgaaagcagctccctagggtccag 28001978  T
Q  99 gattacccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagcccta 160  Q
    | ||||||| ||||||||||||| |||||||| | ||||| ||||||| | |||||||||||    
T  28001979 ggttacccatgtccgtaccaacatgtacgattttcaggataaggtttgccagccaagcccta 28002040  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 20900719 - 20900849
Alignment:
Q  95 cgaggattacccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttg 194  Q
    ||||| |||||||||| ||||| |||| ||| |||||  ||||| ||||||| |  ||||| ||||  ||| |||||||||||| ||||| | |  ||||    
T  20900719 cgagggttacccacgttcgtactaacatgtatgattgccaggataaggtttggcaaccaagacctacctaaaccctatttatacccaggatttatacttg 20900818  T
Q  195 ggtcaggtatgacacttcttaccctaaactt 225  Q
    || || ||||| |||||||||||||| ||||    
T  20900819 ggacaagtatgtcacttcttaccctatactt 20900849  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 18540946 - 18540725
Alignment:
Q  1 ccctaaaatcaaccagattacggtgcgggtcgagggt--cacacgaggtccgggggttgatcacgcccacgcaagccaaaggcagctccccaggaccgag 98  Q
    |||||||||| | |||||||||||||||| | |||||  |||||||||  ||||||||||||||| | ||||| ||| ||||| |||||  ||| |||      
T  18540946 ccctaaaatccatcagattacggtgcgggccaagggttacacacgagggtcgggggttgatcacgtctacgcaggccgaaggctgctcca-agggccgg- 18540849  T
Q  99 gattacccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtc 198  Q
      ||||||||||||||||||||||||| |||||| ||||| ||||||| | | |||||||||  |||| ||||| ||||| || |  | ||||||||| |    
T  18540848 --ttacccacgtccgtaccaacaggtatgattgtcaggataaggtttgccggtcaagccctacctaactcctatatataccca-gccttagccttgggac 18540752  T
Q  199 aggtatgacacttcttaccctaaactt 225  Q
    | |||||||||||||||||||||||||    
T  18540751 aagtatgacacttcttaccctaaactt 18540725  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 12539016 - 12539087
Alignment:
Q  150 gccaagccctatgtaacccctatttatacacaggaatcagccttgggtcaggtatgacacttcttaccctaaa 222  Q
    |||||||||||  ||||| |||||||||| ||||  | |||||| |||| ||| |||||||||||||||||||    
T  12539016 gccaagccctacctaaccactatttatactcaggtcttagccttaggtcgggt-tgacacttcttaccctaaa 12539087  T

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Target: scaffold0294 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 19020 - 18803
Alignment:
Q  2 cctaaaatcaaccagattacggtgcgggtcgagggtcacacg--aggtccgggggttgatcacgcccacgcaagccaaaggcagctccccaggaccgagg 99  Q
    ||||||||| ||||||||||||||| || | ||| | ||||   |||| || ||||||| || ||||||||| ||  |||| |||| |||||    ||||    
T  19020 cctaaaatccaccagattacggtgcaggccaaggtttacactcaaggttcgagggttgaccatgcccacgcaggctgaaggtagcttcccagtgttgagg 18921  T
Q  100 attacccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtca 199  Q
    ||||||||| |||| ||||||| |||||||||| ||||| ||||||| | | |||||||||  |||||||||| |||    |||  | |||||||||| |    
T  18920 attacccacatccgcaccaacaagtacgattgtcaggataaggtttgccagtcaagccctacctaacccctatatatgttgaggccttagccttgggtaa 18821  T
Q  200 ggtatgacacttcttacc 217  Q
    ||||||||||||||||||    
T  18820 ggtatgacacttcttacc 18803  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 17824659 - 17824881
Alignment:
Q  2 cctaaaatcaaccagattacggtgcgggtcgagggt--cacacgaggtccgggggttgatcacgcccacgcaagccaaaggcagctccccaggaccgagg 99  Q
    ||||||||||||||||||||||||||| ||||||||   |||||||||| |||| |||| |||||||||  | ||| ||| |  ||||  |||  || ||    
T  17824659 cctaaaatcaaccagattacggtgcggttcgagggttatacacgaggtctggggattgaccacgcccacaaaggccgaagtccactccttagggtcgtgg 17824758  T
Q  100 attacccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtca 199  Q
     ||||||| |||| |||||||| |||||||||| ||||| ||||||    |   |||||||  |||||||||||| ||| || |  | ||| || ||| |    
T  17824759 gttacccatgtccataccaacatgtacgattgtaaggataaggttttcaag---agccctacctaacccctatttttactcaagtgttagctttaggtaa 17824855  T
Q  200 ggtatgacacttcttaccctaaactt 225  Q
    ||||||||||||||||||||||||||    
T  17824856 ggtatgacacttcttaccctaaactt 17824881  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 17694606 - 17694382
Alignment:
Q  1 ccctaaaatcaaccagattacggtgcgggtcgagggtcacac--gaggtccgggggttgatcacgcccacgcaagccaaaggcagctccccaggaccgag 98  Q
    |||||||| | |||||||||||||||||| ||||||| ||||  ||||||  |||||| | |||  ||||  | ||||||  |||||  ||||| || ||    
T  17694606 ccctaaaaaccaccagattacggtgcgggccgagggttacacatgaggtcaaggggttaaccacaaccacagaggccaaa--cagctatccagggccaag 17694509  T
Q  99 gattacccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtc 198  Q
    ||||||||| |||  |||||||| |||||||||| | ||| ||||||  | | ||| |||||  || ||||| |||||||  | |  | ||||||||| |    
T  17694508 gattacccatgtctataccaacaagtacgattgtcaagataaggttttccagtcaaaccctacttagcccctctttatacctacgctttagccttgggac 17694409  T
Q  199 aggtatgacacttcttaccctaaactt 225  Q
    |||||||||||||||||||||||||||    
T  17694408 aggtatgacacttcttaccctaaactt 17694382  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34605118 - 34604892
Alignment:
Q  1 ccctaaaatcaaccagattacggtgcgggtcgagggtcac--acgaggtccgggggttgatcacgcccacgcaagccaaaggcagctccccaggaccgag 98  Q
    |||||||||| || |||||||| ||| || ||||||| ||  ||||||| |||||||||| || | ||| ||| ||  | || ||||||| ||| ||||     
T  34605118 ccctaaaatccacaagattacgatgcaggccgagggttacgcacgaggttcgggggttgaccatggccatgcaggctgatggtagctccctagggccgat 34605019  T
Q  99 gattacccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtc 198  Q
    | ||||||| ||||  |||| ||||||| ||||| | ||| ||||||| |  ||||||  |   ||||| |||| |||||| |||  | |||||||||||    
T  34605018 ggttacccaggtcctaaccagcaggtacaattgtcaagataaggtttgccaaccaagctttgactaaccactatatatacataggccttagccttgggtc 34604919  T
Q  199 aggtatgacacttcttaccctaaactt 225  Q
    |  ||||||||||||||||||||||||    
T  34604918 aaatatgacacttcttaccctaaactt 34604892  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 24488569 - 24488713
Alignment:
Q  81 cagctccccaggaccgaggattacccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacac 180  Q
    |||||||| ||| || |||  |||||| ||||||||||  |||| ||||||| ||||| | |||| || |||||| ||||  || || |||||||||| |    
T  24488569 cagctcccgagggccaagggctacccatgtccgtaccagtaggtgcgattgtcaggataacgtttttcagccaagtcctacctatccactatttatac-c 24488667  T
Q  181 aggaa-tcagccttgggtcaggtatgacacttcttaccctaaactt 225  Q
     |||  | |||||||||||| |||||||||||||||||||||||||    
T  24488668 tggaccttagccttgggtcatgtatgacacttcttaccctaaactt 24488713  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 9415848 - 9415730
Alignment:
Q  104 cccacgtccgtaccaacaggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtcaggta 203  Q
    ||||||||||| ||   || ||||||||||||||| ||||||| | |||||||||||  ||||| |||||||||| || | || |||||||  |||||||    
T  9415848 cccacgtccgtgcctgaagatacgattgttaggataaggtttgccagccaagccctacctaaccactatttatacccatgcattagccttgactcaggta 9415749  T
Q  204 tgacacttcttaccctaaa 222  Q
    ||| |||||||||||||||    
T  9415748 tgatacttcttaccctaaa 9415730  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 23909570 - 23909669
Alignment:
Q  121 aggtacgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtcaggtatgacacttcttacccta 220  Q
    |||||||||||||||||| ||||||||  |||||||||||  ||||| |||||||||| | |  || | |||||| ||| ||||||||||| ||||||||    
T  23909570 aggtacgattgttaggataaggtttgttagccaagccctacctaaccactatttatacccggacattaaccttggatcatgtatgacactttttacccta 23909669  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 24140167 - 24140260
Alignment:
Q  135 ggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtcaggtatgacacttcttaccctaaactttga 228  Q
    |||| ||| ||||| |||||||||||  ||||| ||| ||||||  |||||| ||| ||||||||||||||| ||||||||| ||||| |||||    
T  24140167 ggataaggattgtcggccaagccctacctaaccactaattatacctaggaattagcattgggtcaggtatgatacttcttactctaaattttga 24140260  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 10916791 - 10916886
Alignment:
Q  126 cgattgttaggattaggtttgtccgccaagccctatgtaacccctatttatacacaggaatcagccttgggtcaggtatgacacttcttaccctaa 221  Q
    ||||||| ||||| ||||||||| |||||||||||  ||||| |||||||||| || |  | | ||||| |||| |||||||||||||||| ||||    
T  10916791 cgattgtcaggataaggtttgtcagccaagccctacctaaccactatttatacccatgtcttaaccttgagtcacgtatgacacttcttactctaa 10916886  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 21352745 - 21352695
Alignment:
Q  95 cgaggattacccacgtccgtaccaacaggtacgattgttaggattaggttt 145  Q
    ||||| |||||||||||||||  | ||||||||||||||||||| ||||||    
T  21352745 cgagggttacccacgtccgtattagcaggtacgattgttaggataaggttt 21352695  T

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