View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9639_low_24 (Length: 241)
Name: NF9639_low_24
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9639_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 6861289 - 6861387
Alignment:
| Q |
39 |
ggacattgaaagagatttaagaaggtcccaagttcgatctccataactaacactctcccgctcccctctaacaattactaacaagtaacattttcctat |
137 |
Q |
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| T |
6861289 |
ggacattgaaagagatttaagaaggtcccaagttcgatctccataactaacactctcccgctcccctctaacaattactaacaactaacattttcctat |
6861387 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 6861417 - 6861480
Alignment:
| Q |
161 |
gtagctctaggttaaggctctactattaagtggtctacagcttctctacgatccgtattttgac |
224 |
Q |
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| T |
6861417 |
gtagctctaggttaaggttctactattaagtggtctacagcttctctacgatccgtattttgac |
6861480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6859851 - 6859891
Alignment:
| Q |
1 |
cttcagtttattctaactgccccagcataaagaaaactgga |
41 |
Q |
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| T |
6859851 |
cttcagtttattctaactgccccagaataaagaaaactgga |
6859891 |
T |
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