View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9639_low_26 (Length: 239)

Name: NF9639_low_26
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9639_low_26
NF9639_low_26
[»] chr5 (28 HSPs)
chr5 (15-222)||(38341523-38341733)
chr5 (9-170)||(12576951-12577116)
chr5 (7-113)||(2713030-2713137)
chr5 (6-124)||(14749382-14749501)
chr5 (6-130)||(9917538-9917663)
chr5 (7-119)||(31636009-31636122)
chr5 (2-129)||(7359344-7359472)
chr5 (6-117)||(38684562-38684674)
chr5 (2-82)||(9235166-9235245)
chr5 (30-124)||(15489605-15489699)
chr5 (15-117)||(21952439-21952540)
chr5 (5-66)||(28015-28077)
chr5 (30-83)||(3775180-3775233)
chr5 (2-82)||(7678595-7678676)
chr5 (133-170)||(27249234-27249271)
chr5 (126-192)||(28676591-28676653)
chr5 (7-59)||(29922424-29922477)
chr5 (2-66)||(30588580-30588645)
chr5 (7-83)||(33667551-33667628)
chr5 (10-86)||(36123274-36123351)
chr5 (30-70)||(1001295-1001335)
chr5 (8-59)||(6889133-6889185)
chr5 (6-53)||(11675675-11675723)
chr5 (131-192)||(14667759-14667816)
chr5 (5-64)||(23980079-23980139)
chr5 (134-170)||(32516570-32516606)
chr5 (126-170)||(42199300-42199344)
chr5 (7-130)||(42199355-42199479)
[»] chr2 (24 HSPs)
chr2 (9-129)||(26784431-26784552)
chr2 (6-124)||(19235072-19235191)
chr2 (15-124)||(23714361-23714468)
chr2 (15-124)||(24102033-24102140)
chr2 (6-130)||(43832167-43832292)
chr2 (2-124)||(37470217-37470340)
chr2 (4-124)||(38860253-38860374)
chr2 (2-117)||(38435034-38435150)
chr2 (2-71)||(33287549-33287619)
chr2 (6-119)||(37481705-37481819)
chr2 (7-124)||(42543310-42543428)
chr2 (7-79)||(26670888-26670961)
chr2 (126-170)||(6218981-6219025)
chr2 (132-192)||(18958903-18958959)
chr2 (6-124)||(42092592-42092711)
chr2 (129-192)||(12141540-12141599)
chr2 (126-168)||(13240969-13241011)
chr2 (6-59)||(19024318-19024372)
chr2 (6-106)||(33504316-33504418)
chr2 (128-170)||(38860187-38860229)
chr2 (7-124)||(44437810-44437928)
chr2 (7-111)||(5759084-5759189)
chr2 (9-52)||(1626342-1626386)
chr2 (128-201)||(11412708-11412777)
[»] chr6 (11 HSPs)
chr6 (7-154)||(8364602-8364749)
chr6 (7-97)||(10617323-10617414)
chr6 (6-82)||(34593-34670)
chr6 (5-119)||(9593795-9593908)
chr6 (126-170)||(9593930-9593974)
chr6 (30-124)||(4948417-4948511)
chr6 (30-124)||(4955388-4955482)
chr6 (6-130)||(6906916-6907040)
chr6 (10-106)||(35199714-35199811)
chr6 (5-128)||(31818602-31818726)
chr6 (6-124)||(33997632-33997749)
[»] chr7 (22 HSPs)
chr7 (6-124)||(28628021-28628140)
chr7 (6-100)||(24549776-24549871)
chr7 (5-78)||(45601597-45601671)
chr7 (6-65)||(28858179-28858239)
chr7 (126-170)||(40169663-40169707)
chr7 (126-170)||(47848688-47848732)
chr7 (28-83)||(14593876-14593931)
chr7 (2-124)||(38135297-38135419)
chr7 (126-168)||(42187486-42187528)
chr7 (5-59)||(1569156-1569211)
chr7 (28-83)||(16013399-16013454)
chr7 (5-67)||(21517467-21517530)
chr7 (126-157)||(35713722-35713753)
chr7 (9-83)||(40830318-40830393)
chr7 (6-71)||(12966144-12966210)
chr7 (126-197)||(38920785-38920852)
chr7 (18-82)||(30814771-30814836)
chr7 (126-170)||(7189450-7189494)
chr7 (126-170)||(28628157-28628201)
chr7 (5-52)||(30664715-30664763)
chr7 (126-166)||(38135436-38135476)
chr7 (35-119)||(47848754-47848838)
[»] chr8 (34 HSPs)
chr8 (5-130)||(30559762-30559888)
chr8 (9-120)||(16351457-16351569)
chr8 (6-124)||(10079995-10080114)
chr8 (33-124)||(38178376-38178467)
chr8 (5-82)||(2216405-2216482)
chr8 (7-130)||(7531733-7531857)
chr8 (5-124)||(29520725-29520844)
chr8 (2-79)||(35643690-35643768)
chr8 (4-64)||(30198352-30198413)
chr8 (9-76)||(13589602-13589670)
chr8 (6-83)||(4011199-4011277)
chr8 (6-119)||(16917263-16917377)
chr8 (6-86)||(16994532-16994613)
chr8 (7-62)||(16971843-16971899)
chr8 (126-170)||(35643825-35643869)
chr8 (6-68)||(24739936-24739999)
chr8 (29-116)||(25985601-25985688)
chr8 (5-68)||(28269766-28269829)
chr8 (37-124)||(29700351-29700438)
chr8 (102-153)||(38668075-38668126)
chr8 (29-124)||(39953376-39953471)
chr8 (6-83)||(79143-79221)
chr8 (128-170)||(13171875-13171917)
chr8 (6-71)||(23023353-23023419)
chr8 (29-119)||(32043670-32043760)
chr8 (6-59)||(39967587-39967641)
chr8 (30-124)||(45331681-45331775)
chr8 (6-62)||(24399877-24399934)
chr8 (2-82)||(30783126-30783207)
chr8 (34-83)||(45512612-45512661)
chr8 (126-170)||(6483271-6483315)
chr8 (126-170)||(9695645-9695689)
chr8 (5-76)||(9904969-9905041)
chr8 (126-170)||(16917198-16917242)
[»] chr1 (35 HSPs)
chr1 (6-118)||(50806750-50806861)
chr1 (7-124)||(50771645-50771763)
chr1 (9-117)||(3818947-3819056)
chr1 (6-124)||(42501183-42501302)
chr1 (6-83)||(8342969-8343047)
chr1 (6-114)||(6025690-6025799)
chr1 (130-192)||(37463101-37463159)
chr1 (28-124)||(43898304-43898400)
chr1 (126-170)||(48431630-48431674)
chr1 (2-124)||(40416446-40416569)
chr1 (6-124)||(43423794-43423913)
chr1 (7-124)||(12261802-12261920)
chr1 (126-168)||(14226053-14226095)
chr1 (7-124)||(28528430-28528548)
chr1 (7-71)||(8203223-8203288)
chr1 (6-82)||(15577535-15577612)
chr1 (6-114)||(30834065-30834174)
chr1 (7-66)||(19969301-19969361)
chr1 (10-117)||(32404618-32404726)
chr1 (17-124)||(33560957-33561065)
chr1 (7-115)||(37263415-37263523)
chr1 (31-83)||(51584860-51584912)
chr1 (5-76)||(52561676-52561748)
chr1 (6-124)||(853873-853992)
chr1 (6-112)||(38868969-38869076)
chr1 (6-83)||(12231481-12231559)
chr1 (5-82)||(29577229-29577307)
chr1 (37-119)||(52160356-52160438)
chr1 (36-117)||(2544681-2544761)
chr1 (29-118)||(10272339-10272428)
chr1 (29-106)||(52442640-52442717)
chr1 (6-97)||(7921940-7922031)
chr1 (34-82)||(36339920-36339968)
chr1 (126-170)||(43423733-43423777)
chr1 (126-170)||(44905556-44905600)
[»] chr4 (32 HSPs)
chr4 (6-124)||(47147448-47147567)
chr4 (8-119)||(26356699-26356811)
chr4 (5-119)||(28351639-28351754)
chr4 (7-64)||(10209171-10209229)
chr4 (34-149)||(21945755-21945872)
chr4 (16-117)||(25967359-25967461)
chr4 (30-83)||(18966721-18966774)
chr4 (6-106)||(40018277-40018378)
chr4 (6-53)||(20047581-20047629)
chr4 (126-170)||(31459044-31459088)
chr4 (126-170)||(38570971-38571015)
chr4 (126-170)||(47611741-47611785)
chr4 (126-170)||(49987442-49987486)
chr4 (3-53)||(26024935-26024986)
chr4 (6-124)||(42639108-42639227)
chr4 (30-81)||(49987526-49987577)
chr4 (7-124)||(31897517-31897635)
chr4 (7-124)||(31961355-31961473)
chr4 (5-66)||(45204926-45204988)
chr4 (6-86)||(45569097-45569178)
chr4 (30-83)||(48033201-48033254)
chr4 (4-64)||(50680875-50680936)
chr4 (30-66)||(8599054-8599090)
chr4 (126-170)||(28236197-28236241)
chr4 (126-170)||(28497504-28497547)
chr4 (126-154)||(35690322-35690350)
chr4 (5-64)||(37488226-37488286)
chr4 (126-170)||(37773675-37773719)
chr4 (30-70)||(38903831-38903870)
chr4 (7-82)||(46372141-46372217)
chr4 (126-170)||(51252685-51252729)
chr4 (5-76)||(51421853-51421925)
[»] scaffold0018 (2 HSPs)
scaffold0018 (7-65)||(178509-178568)
scaffold0018 (126-192)||(44092-44154)
[»] chr3 (25 HSPs)
chr3 (5-76)||(39600768-39600840)
chr3 (126-170)||(42510238-42510282)
chr3 (129-192)||(45289318-45289379)
chr3 (30-123)||(11581520-11581613)
chr3 (2-66)||(40116552-40116617)
chr3 (126-192)||(50960857-50960919)
chr3 (8-59)||(36820067-36820119)
chr3 (15-118)||(37351488-37351592)
chr3 (6-65)||(43308696-43308756)
chr3 (126-170)||(49503778-49503822)
chr3 (126-170)||(54128392-54128436)
chr3 (6-76)||(19162675-19162746)
chr3 (30-129)||(31261055-31261153)
chr3 (126-169)||(46431897-46431940)
chr3 (126-188)||(33272246-33272308)
chr3 (126-168)||(39235154-39235196)
chr3 (6-59)||(46431767-46431821)
chr3 (15-83)||(2340814-2340883)
chr3 (5-53)||(45289178-45289227)
chr3 (126-170)||(21200562-21200606)
chr3 (126-170)||(26490329-26490373)
chr3 (126-170)||(37534430-37534474)
chr3 (35-119)||(38430928-38431012)
chr3 (6-65)||(41452828-41452888)
chr3 (126-154)||(48734359-48734387)
[»] scaffold0325 (1 HSPs)
scaffold0325 (15-83)||(11913-11982)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 38341523 - 38341733
Alignment:
Q  15 attaatctctatatcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctcctta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341523 attaatctctatatcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctcctta 38341622  T
Q  115 ctacataa-------tcaacatgcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaacttcctctctagtctct 207  Q
    ||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  38341623 ctacataatcaacattcaacatacccaaaccacctaagcctattttccactgtcttttcta----ctatagctgctaccccaacttcctctctagtctct 38341718  T
Q  208 aatgtcatttctaaa 222  Q
    |||||||||||||||    
T  38341719 aatgtcatttctaaa 38341733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 12576951 - 12577116
Alignment:
Q  9 caactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctacc 107  Q
    ||||| ||||||||||| ||||| ||||||||||| |||| ||||| ||||| |||||| |||  ||||||||||  || | ||||||||||| |||||     
T  12576951 caactcattaatctctagatctttcttaatagtttatcttgtagtttttctaggtcttcctctgcctctagtgataggactaccctccatctgatctact 12577050  T
Q  108 ctccttactacat-aatcaacatg--cccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||| |  ||| |||||  |||||||||| |||| ||| |||||||  |||||||||||    
T  12577051 ctccttactacttctatctacatgcccccaaaccacataagtctagtttccaccatcttttctact 12577116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 2713137 - 2713030
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||| ||||||| ||| |||||||||||||||||||||||| ||||| ||||||  || |||||||||||| || |  |||||||||| ||||    
T  2713137 tccaactcattcatctctagatccttcttaatagtttctcttatagtttttctaggtcttcccctgactctagtgatttgactctcctccatctgatcta 2713038  T
Q  106 ccctcctt 113  Q
    | ||||||    
T  2713037 ctctcctt 2713030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 14749501 - 14749382
Alignment:
Q  6 atccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    ||||||||  |||||||||| ||| ||||| |||||||||||||||||| ||||| |||||| |||  || |||||||| || | ||||||||||| ||     
T  14749501 atccaactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtcttcctctgcctttagtgatttgactcccctccatctgatcg 14749402  T
Q  105 accctccttactacataatc 124  Q
    || |||||||| ||| ||||    
T  14749401 actctccttacaacagaatc 14749382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 9917538 - 9917663
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||| ||||||||||||| || |||||||||||| |||||| ||||| ||| || |||  |||| |||||| || |  |||||||||| ||     
T  9917538 atccaactcattgatctctatatctttctaaatagtttctctaatagtttttctaggtcatcctctgtctcttgtgatttgactatcctccatctgatcg 9917637  T
Q  105 accctccttactacataatcaacatg 130  Q
    || ||| |||||||| ||||||||||    
T  9917638 actctctttactacaaaatcaacatg 9917663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 31636009 - 31636122
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||| ||||||||||| ||||| ||||||||||| |||||| |||||  |||||  ||| ||||||||||| || | ||| ||||||  ||||    
T  31636009 tccaactcattgatctctatatccttcttgatagtttctctaatagtttttctagatcttcccctatctctagtgatttgactccccaccatctaatcta 31636108  T
Q  106 ccctccttactaca 119  Q
    | ||||||||||||    
T  31636109 ctctccttactaca 31636122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 7359344 - 7359472
Alignment:
Q  2 ttcgatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctg 100  Q
    |||||||||||| ||||||||||| || || || ||||||||||||||| ||| ||||| |  ||| |||  ||||||||||  || |  ||||||||||    
T  7359344 ttcgatccaacttattaatctctagatttttctaaatagtttctcttatggtttttctaggctttcctctgcctctagtgatatgactatcctccatctg 7359443  T
Q  101 gtctaccctccttactacataatcaacat 129  Q
     ||||| |||||||||||| |||| ||||    
T  7359444 atctactctccttactacagaatctacat 7359472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 38684674 - 38684562
Alignment:
Q  6 atccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||||||| ||| ||||||| |||||||||| ||||| ||||| |||||| | ||  |||||||||| || | ||||||||||  | |    
T  38684674 atccaactaattaatctctagatctttcttaaaagtttctcttgtagtttttctaggtcttcctttacatctagtgattggaatcccctccatctaatat 38684575  T
Q  105 accctccttacta 117  Q
    || ||||||||||    
T  38684574 actctccttacta 38684562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 9235245 - 9235166
Alignment:
Q  2 ttcgatccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    ||||||||| || ||||||||||||||| |||||||||||||||||  ||||| ||||| |||||| |||  ||||||||||    
T  9235245 ttcgatccagctcattaatctctatatctttcttaatagtttctct--tagtttttctaggtcttcctctgcctctagtgat 9235166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 15489605 - 15489699
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataatc 124  Q
    |||||||||||||||||||| ||| ||||| |||||| |||  |||||||||||| | |  |||||||||  ||||| ||||||| |||| ||||    
T  15489605 ttcttaatagtttctcttattgtttttctaggtcttcctctgcctctagtgattcaactatcctccatctaatctactctccttaatacaaaatc 15489699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 21952540 - 21952439
Alignment:
Q  15 attaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctcctt 113  Q
    ||||||||||| ||| |||| |||||||||||  |||||| ||||| ||||||  ||| ||||||||||| || | ||||||||||| ||||  ||||||    
T  21952540 attaatctctagatccttctcaatagtttctc--atagtttttctaggtcttcccctacctctagtgatttgactcccctccatctgatctattctcctt 21952443  T
Q  114 acta 117  Q
    ||||    
T  21952442 acta 21952439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 28077 - 28015
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttc 66  Q
    ||||||||| ||||| ||||| ||||| | |||||||||||||||||||| ||||| ||||||    
T  28077 gatccaacttattaacctctaaatctttcctaatagtttctcttatagtttttctaggtcttc 28015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 3775180 - 3775233
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    ||||||||||||| |||||||||| ||||| |||||| |||  |||||||||||    
T  3775180 ttcttaatagtttatcttatagtttttctaggtcttcttctgcctctagtgatt 3775233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 7678676 - 7678595
Alignment:
Q  2 ttcgatccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    |||||||||||| ||||||||||| ||| |||| ||||||||||||||| ||| | |||  ||||| |||  ||||||||||    
T  7678676 ttcgatccaactcattaatctctagatctttctaaatagtttctcttatggttttactagatcttcctctgcctctagtgat 7678595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 27249271 - 27249234
Alignment:
Q  133 caaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  27249271 caaaccacctaagcctaatttccactttcttttctact 27249234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 28676653 - 28676591
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaact 192  Q
    ||||||| |||||||||||| |||||||||||  |||||||||    ||||||||||||||| ||||    
T  28676653 acatgccgaaaccacctaagactattttccaccatcttttcta----ctatagctgctacccgaact 28676591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 29922477 - 29922424
Alignment:
Q  7 tccaactgattaatctctatatctt-cttaatagtttctcttatagttcttcta 59  Q
    |||||||  |||||||||| ||||| |||||||||||||||||||||| |||||    
T  29922477 tccaacttgttaatctctaaatctttcttaatagtttctcttatagtttttcta 29922424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 30588645 - 30588580
Alignment:
Q  2 ttcgatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttc 66  Q
    |||||||||||| ||| ||||||| ||||| ||||| | |||||||||||||| ||||| ||||||    
T  30588645 ttcgatccaactcattcatctctagatctttcttaacaatttctcttatagtttttctaggtcttc 30588580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 33667628 - 33667551
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    ||||||| ||||||||||| ||| |||||||||  ||||||||||||| ||||| ||||||  |||  ||||||||||    
T  33667628 tccaactcattaatctctagatccttcttaataacttctcttatagtttttctaggtcttcccctacatctagtgatt 33667551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 36123274 - 36123351
Alignment:
Q  10 aactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcga 86  Q
    |||| ||||||||||| ||| ||||| || ||||| ||||||| | |||||||||||| | || ||||||||||||||    
T  36123274 aactcattaatctctagatccttcttgatggtttcccttatagcttttctaagtcttcctttacctctagtgattcga 36123351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 1001295 - 1001335
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatct 70  Q
    |||||||||||||| ||||||||| ||||| ||||||||||    
T  1001295 ttcttaatagtttcacttatagtttttctaggtcttcatct 1001335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 6889185 - 6889133
Alignment:
Q  8 ccaactgattaatctctatatctt-cttaatagtttctcttatagttcttcta 59  Q
    |||||| ||||||||||| ||||| | |||||||||||||||||||| |||||    
T  6889185 ccaactaattaatctctaaatctttcctaatagtttctcttatagtttttcta 6889133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 11675723 - 11675675
Alignment:
Q  6 atccaactgattaatctctatatct-tcttaatagtttctcttatagtt 53  Q
    |||||||| ||||||||||| |||| || ||||||||||||||||||||    
T  11675723 atccaactcattaatctctaaatctgtcctaatagtttctcttatagtt 11675675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 14667816 - 14667759
Alignment:
Q  131 cccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaact 192  Q
    ||||||||||||||| |||||||||||  |||||||||    |||||| |||||||||||||    
T  14667816 cccaaaccacctaagtctattttccaccatcttttcta----ctataggtgctaccccaact 14667759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 23980139 - 23980079
Alignment:
Q  5 gatccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtct 64  Q
    ||||||||| |||||||| || ||| |||| ||||||||||||||| ||||||||| ||||    
T  23980139 gatccaactcattaatctataaatcattctcaatagtttctcttattgttcttctaggtct 23980079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 32516606 - 32516570
Alignment:
Q  134 aaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||||||  |||||||||||    
T  32516606 aaaccacctaagcctattttccaccatcttttctact 32516570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 42199344 - 42199300
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||||||||| ||| |||||||  |||||||||||    
T  42199344 acatgcccaaaccacctaagtctagtttccaccatcttttctact 42199300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 42199479 - 42199355
Alignment:
Q  7 tccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| |||||| |||| ||||| || |||||||| ||| |||||| ||||| |||||  |||  | ||||||||| || | | |||||| || ||||    
T  42199479 tccaactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctttctctccccctagtgatttgactactctccatgtgatcta 42199380  T
Q  106 ccctccttactacataatcaacatg 130  Q
    | |||||||||||| |||| |||||    
T  42199379 ctctccttactacagaatctacatg 42199355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 26784431 - 26784552
Alignment:
Q  9 caactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctacc 107  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||  |||  ||||||||||| || | ||||||||||  ||||||    
T  26784431 caactcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctttctctgcctctagtgatttgactaccctccatcttatctacc 26784530  T
Q  108 ctccttactacataatcaacat 129  Q
    |||||||||||| |||| ||||    
T  26784531 ctccttactacaaaatccacat 26784552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 19235072 - 19235191
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||| | ||||||||||| ||||| || ||||||||||||||||||| ||||| |||||| |||| ||||||||||| || | ||||||||||| |||    
T  19235072 atccaaatcattaatctctagatctttctcaatagtttctcttatagtttttctaggtcttcctctatctctagtgatttgactcccctccatctgatct 19235171  T
Q  105 accctccttactacataatc 124  Q
    || ||| |||||||| ||||    
T  19235172 actctctttactacagaatc 19235191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 23714361 - 23714468
Alignment:
Q  15 attaatctctatatcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctcctta 114  Q
    ||||||||||| |||||  | ||| |||||||||||||| |||||||||||||||||  |||||||||| || | ||| |||| || ||||| |||||||    
T  23714361 attaatctctagatctt--tgataatttctcttatagtttttctaagtcttcatctacgtctagtgatttgactccccaccatttgatctactctcctta 23714458  T
Q  115 ctacataatc 124  Q
    ||||||||||    
T  23714459 ctacataatc 23714468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 24102033 - 24102140
Alignment:
Q  15 attaatctctatatcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctcctta 114  Q
    ||||||||||| |||||  | ||| |||||||||||||| |||||||||||||||||  |||||||||| || | ||| |||| || ||||| |||||||    
T  24102033 attaatctctagatctt--tgataatttctcttatagtttttctaagtcttcatctacgtctagtgatttgactccccaccatttgatctactctcctta 24102130  T
Q  115 ctacataatc 124  Q
    ||||||||||    
T  24102131 ctacataatc 24102140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 43832292 - 43832167
Alignment:
Q  6 atccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||||||||  | || |||||| |||   |||| ||||| |||| | ||||||||| |||    
T  43832292 atccaactcattaatctctagatccttcttaatagtttctcttatagtttgtttaggtcttcctctgcgtctactgatttgattactctccatctgatct 43832193  T
Q  105 accctccttactacataatcaacatg 130  Q
    || ||||| ||||||||||| |||||    
T  43832192 actctcctaactacataatccacatg 43832167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 37470217 - 37470340
Alignment:
Q  2 ttcgatccaactgattaatctctatatct-tcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctg 100  Q
    |||||||||||| ||||||||||| |||| || |||||||||||||||||||| ||  | |||||| |||| | ||||||||  || | || |||||||     
T  37470217 ttcgatccaactcattaatctctagatctgtcctaatagtttctcttatagttttttcaggtcttcctctaccactagtgatctgactaccttccatcta 37470316  T
Q  101 gtctaccctccttactacataatc 124  Q
     ||||| ||||||| |||||||||    
T  37470317 atctactctccttaatacataatc 37470340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 38860374 - 38860253
Alignment:
Q  4 cgatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggt 102  Q
    |||| ||||| || |||||||| ||||| ||||||||||||||||||  || ||| |||||||| |||  ||||||| ||| || | ||||||||||  |    
T  38860374 cgatacaactcatgaatctctagatctttcttaatagtttctcttatcatttttccaagtcttcgtctgcctctagtaatttgactaccctccatctcat 38860275  T
Q  103 ctaccctccttactacataatc 124  Q
    |||| |||||| ||||||||||    
T  38860274 ctactctccttcctacataatc 38860253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 38435150 - 38435034
Alignment:
Q  2 ttcgatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctg 100  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||| ||||| ||||| |||| | |||  ||||||||||  || |  ||||||| ||    
T  38435150 ttcgatccaacacattaatctctagatctttcttaatagtttctcttgtagtttttctaggtctacctctgcctctagtgatctgactatcctccatatg 38435051  T
Q  101 gtctaccctccttacta 117  Q
     ||||| ||||||||||    
T  38435050 atctactctccttacta 38435034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 33287619 - 33287549
Alignment:
Q  2 ttcgatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatcta 71  Q
    ||||||| |||| |||||| |||| ||||| |||||||||||||||||||||| ||||| |||||| ||||    
T  33287619 ttcgatctaactcattaatttctagatctttcttaatagtttctcttatagtttttctaggtcttcctcta 33287549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 37481705 - 37481819
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||| ||| ||| ||||| ||||||||||||||| |||||| ||||  ||||||||||| ||| ||||||   | | ||||||||||| |||    
T  37481705 atccaactcatttatcgctagatctttcttaatagtttctctaatagtttttcttggtcttcatctacctccagtgatctaactcccctccatctgatct 37481804  T
Q  105 accctccttactaca 119  Q
    || ||||| ||||||    
T  37481805 actctcctaactaca 37481819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 42543428 - 42543310
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||| ||||||| ||| ||| |||||||||||||||||||| ||||| |||| |  ||| ||||||||||  || | |||||||| || ||||    
T  42543428 tccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgatctgactcccctccatttgatcta 42543329  T
Q  106 ccctccttactacataatc 124  Q
    | ||||| |||||| ||||    
T  42543328 ctctcctaactacagaatc 42543310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 26670961 - 26670888
Alignment:
Q  7 tccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagt 79  Q
    ||||||| ||||||||||| ||||| ||||||||||||| |||||||| || || |||||| |||| |||||||    
T  26670961 tccaactcattaatctctaaatctttcttaatagtttcttttatagtttttgtaggtcttcctctacctctagt 26670888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 6219025 - 6218981
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||    
T  6219025 acatgtccaaaccacctaagcctattatccactatcttttctact 6218981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 18958959 - 18958903
Alignment:
Q  132 ccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaact 192  Q
    ||||||||||||||||||||||||||  |||||||||    |||||| |||||||||||||    
T  18958959 ccaaaccacctaagcctattttccaccatcttttcta----ctataggtgctaccccaact 18958903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 42092711 - 42092592
Alignment:
Q  6 atccaactgattaatctctatatcttctt-aatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||||||| ||||| || ||||||||||| ||||||| ||||| |||| | | |  || |||||| | || | ||||||||||  |||    
T  42092711 atccaactaattaatctctacatcttttttaatagtttctcctatagtttttctaggtctacctgtctctatagtgaattgactaccctccatctaatct 42092612  T
Q  105 accctccttactacataatc 124  Q
    || |||||||||||| ||||    
T  42092611 actctccttactacaaaatc 42092592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 12141599 - 12141540
Alignment:
Q  129 tgcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaact 192  Q
    |||||||||||||||||||| ||||||||  |||||||||    |||||| |||||||||||||    
T  12141599 tgcccaaaccacctaagcctcttttccaccatcttttcta----ctataggtgctaccccaact 12141540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 13240969 - 13241011
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttcta 168  Q
    |||||||||||||||||||||||| |||||||  |||||||||    
T  13240969 acatgcccaaaccacctaagcctagtttccaccatcttttcta 13241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 19024372 - 19024318
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttcta 59  Q
    |||||||| |||||||| || ||||| |||||||||||||||||| |||||||||    
T  19024372 atccaactcattaatctttagatctttcttaatagtttctcttatggttcttcta 19024318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 33504418 - 33504316
Alignment:
Q  6 atccaactgattaa-tctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtc 103  Q
    |||||||| ||||| |||||| ||||| |||||||||||||||||||||| ||||| || ||  |||  ||||||||||  || | ||||||||||| ||    
T  33504418 atccaacttattaaatctctagatctttcttaatagtttctcttatagtttttctaggtttttctctgcctctagtgatctgactaccctccatctgatc 33504319  T
Q  104 tac 106  Q
    |||    
T  33504318 tac 33504316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 38860229 - 38860187
Alignment:
Q  128 atgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||| ||||||||||||||||||||||||  |||||||||||    
T  38860229 atgcctaaaccacctaagcctattttccacaatcttttctact 38860187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 44437810 - 44437928
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||| ||||||| ||| |||||||||||||||| ||||||| ||||| |||| |  ||| ||||||||||  || | ||||||||||  ||||    
T  44437810 tccaactcatttatctctagatccttcttaatagtttctcatatagtttttctaggtctacccctacctctagtgatctgactcccctccatctcatcta 44437909  T
Q  106 ccctccttactacataatc 124  Q
      ||||||| |||| ||||    
T  44437910 tactccttattacagaatc 44437928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 5759084 - 5759189
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||| ||||||| ||| |||||  |||||||||| |||||| ||||| || ||   ||| ||||||||||| |||| ||||||||||| ||||    
T  5759084 tccaactcattgatctctagatccttcttggtagtttctctaatagtttttctaggtatttccctacctctagtgatttgattcccctccatctgatcta 5759183  T
Q  106 ccctcc 111  Q
    | ||||    
T  5759184 ctctcc 5759189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 1626386 - 1626342
Alignment:
Q  9 caactgattaatctctatatctt-cttaatagtttctcttatagt 52  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  1626386 caactcattaatctctagatctttcttaatagtttctcttatagt 1626342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 11412777 - 11412708
Alignment:
Q  128 atgcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaacttcctctcta 201  Q
    |||||||||| |||||||||||||||||||  | |||||||    |||||| |||||||||||||  |||||||    
T  11412777 atgcccaaacaacctaagcctattttccaccatattttcta----ctataggtgctaccccaactctctctcta 11412708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 8364749 - 8364602
Alignment:
Q  7 tccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| |||||| |||| ||||| |||||||||||||||||||||| || || ||||||||||  ||||||||||  ||    |||||||||| ||||    
T  8364749 tccaacttattaatttctaaatctttcttaatagtttctcttatagtttttttaggtcttcatcttcctctagtgatctgacaatcctccatctgatcta 8364650  T
Q  106 ccctccttactacataatcaacatgcccaaaccacctaagcctattttc 154  Q
    | |||||  ||||||  || |||||||||||||||||||||||||||||    
T  8364649 ctctcctagctacat-ctctacatgcccaaaccacctaagcctattttc 8364602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 10617323 - 10617414
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccat 97  Q
    ||||||| ||||||||||| ||| |||||||| ||||||||||||||| ||||| || ||| |||| ||||||||||| || | ||||||||    
T  10617323 tccaactcattaatctctagatccttcttaatggtttctcttatagtttttctaggttttcttctacctctagtgatttgactcccctccat 10617414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 34593 - 34670
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    |||||||| |||||||| || ||||| |||||| ||||||||||||||| ||||| |||||| |||  ||||||||||    
T  34593 atccaactcattaatctttagatctttcttaatggtttctcttatagtttttctaggtcttcctctgcctctagtgat 34670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 9593795 - 9593908
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtc 103  Q
    ||||||||| |||||||||||  |||| | ||||||||||||||||| || ||||| |||||| |||| ||||  ||||| || |  |||||||||| ||    
T  9593795 gatccaactcattaatctctaagtctttcctaatagtttctcttataatttttctaggtcttcctctacctct--tgatttgactctcctccatctgatc 9593892  T
Q  104 taccctccttactaca 119  Q
    ||| || |||||||||    
T  9593893 tactcttcttactaca 9593908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 9593930 - 9593974
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||    
T  9593930 acatgcccaaaccacctaagcctattttctaccatcttttctact 9593974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 4948417 - 4948511
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataatc 124  Q
    |||| |||||||| |||| ||||| || || |||||| |||| |||||||| || || |  | |||||||| ||||| |||||||||||||||||    
T  4948417 ttctcaatagtttttcttttagtttttgtaggtcttcctctacctctagtggtttgactatcttccatctgatctactctccttactacataatc 4948511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 4955388 - 4955482
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataatc 124  Q
    |||| |||||||| |||| ||||| || || |||||| |||| |||||||| || || |  | |||||||| ||||| |||||||||||||||||    
T  4955388 ttctcaatagtttttcttttagtttttgtaggtcttcctctacctctagtggtttgactatcttccatctgatctactctccttactacataatc 4955482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 6906916 - 6907040
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    ||||||||  ||||| |||| ||||| ||||||||| ||| |||||| | ||| |  |||||||||| |||| |||||| || | |||| |||||| |||    
T  6906916 atccaactcgttaatatctagatctttcttaatagtctct-ttatagcttttcaagatcttcatctacctctcgtgatttgactaccctgcatctgatct 6907014  T
Q  105 accctccttactacataatcaacatg 130  Q
    || |||||||||||| |||| |||||    
T  6907015 actctccttactacaaaatctacatg 6907040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 35199714 - 35199811
Alignment:
Q  10 aactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctac 106  Q
    |||| ||||||||||| ||||| | ||||||||||| ||||| || |||||| ||||  |||| ||||||||||  || | ||||||||||| |||||    
T  35199714 aactcattaatctctagatctttcctaatagtttcttttataatttttctaattcttactctagctctagtgatatgactaccctccatctgatctac 35199811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 31818726 - 31818602
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtc 103  Q
    ||||||||| ||||||||| | | ||| | |||||||||||||||||||| ||||| ||||||  ||| || |||||||   | | |||||||| || ||    
T  31818726 gatccaactcattaatctccaaacctttcctaatagtttctcttatagtttttctaggtcttctcctacctttagtgatctcactaccctccatatgatc 31818627  T
Q  104 taccctccttactacataatcaaca 128  Q
    |||  |||||||| || ||||||||    
T  31818626 tactttccttactgcagaatcaaca 31818602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 33997632 - 33997749
Alignment:
Q  6 atccaactgattaatctctata-tcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| |||||||||||   | |||||||||||||||||||||||| | | | |||||| |||  |||||||| || || | |||||||||| | ||    
T  33997632 atccaactcattaatctctaggcttttcttaatagtttctcttatagttttccaaggtcttcctctgcctctagtgttttgactaccctccatctagcct 33997731  T
Q  105 accctccttactacataatc 124  Q
    |  |||||||||||| ||||    
T  33997732 a--ctccttactacaaaatc 33997749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 28628021 - 28628140
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||||||| ||||| | |||||||||||||||||||| ||||| |||||| |||| |||| |||||| || |  |||||||| | |||    
T  28628021 atccaactcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtcttcctctacctcttgtgatttgactatcctccatcggatct 28628120  T
Q  105 accctccttactacataatc 124  Q
    || |||||||||||||||||    
T  28628121 actctccttactacataatc 28628140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 24549776 - 24549871
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctg 100  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||||||||||  | |||||| |||| ||||||||||| || | |||||||||||    
T  24549776 atccaactcattaatctctagatctttcttaatagtttctcttatagttctttcaggtcttcttctacctctagtgatttgaatcccctccatctg 24549871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 45601671 - 45601597
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctag 78  Q
    ||||||||| ||||||||||| ||||| |||||| ||||||||||||||| ||||| |||||| |||| ||||||    
T  45601671 gatccaactcattaatctctagatctttcttaatggtttctcttatagtttttctaggtcttcctctacctctag 45601597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 28858239 - 28858179
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtctt 65  Q
    |||||||| ||||||||||| ||||| ||||||||||| |||||||||| |||||||||||    
T  28858239 atccaacttattaatctctagatctttcttaatagtttgtcttatagtttttctaagtctt 28858179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 40169707 - 40169663
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  40169707 acatgcccaaaccacctaagcctattttccaccatcttttctact 40169663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 47848732 - 47848688
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  47848732 acatgcccaaaccacctaagcctattttccaccatcttttctact 47848688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 14593931 - 14593876
Alignment:
Q  28 tcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    |||||||||||||||||||||||||| ||||| ||||||  ||| |||||||||||    
T  14593931 tcttcttaatagtttctcttatagtttttctaggtcttcccctacctctagtgatt 14593876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 38135297 - 38135419
Alignment:
Q  2 ttcgatccaactgattaatctctatatcttctt-aatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctg 100  Q
    |||| ||||||| ||||||||||| ||||| || |||||||||||||||| || ||||| ||||||||||  ||||| ||||  || |  ||||||||||    
T  38135297 ttcggtccaactcattaatctctaaatcttttttaatagtttctcttatactttttctaggtcttcatctgcctctaatgatctgactatcctccatctg 38135396  T
Q  101 gtctaccctccttactacataatc 124  Q
     ||||  |||||||||||| ||||    
T  38135397 atcta-tctccttactacaaaatc 38135419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 42187528 - 42187486
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttcta 168  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  42187528 acatgcccaaaccacctaagcctattttccaccatcttttcta 42187486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 1569211 - 1569156
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttcta 59  Q
    ||||||||| ||||||||||| ||||| |||||||||| ||||||||||| |||||    
T  1569211 gatccaactcattaatctctagatctttcttaatagttactcttatagtttttcta 1569156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 16013454 - 16013399
Alignment:
Q  28 tcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    |||||||||||||||||||||||||| ||||| ||||||  ||| |||| ||||||    
T  16013454 tcttcttaatagtttctcttatagtttttctaggtcttcccctacctctggtgatt 16013399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 21517467 - 21517530
Alignment:
Q  5 gatccaactgattaatctctatatcttctt-aatagtttctcttatagttcttctaagtcttca 67  Q
    ||||||||| ||||||||||| || || || ||||||||||||||||||| ||||| |||||||    
T  21517467 gatccaacttattaatctctaaatattttttaatagtttctcttatagtttttctaggtcttca 21517530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 157
Target Start/End: Complemental strand, 35713753 - 35713722
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccac 157  Q
    ||||||||||||||||||||||||||||||||    
T  35713753 acatgcccaaaccacctaagcctattttccac 35713722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 40830393 - 40830318
Alignment:
Q  9 caactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    ||||| |||||| |||| ||| |||||||||||||||||||||| | ||||| |||||| |||  |||||||||||    
T  40830393 caactcattaatttctagatccttcttaatagtttctcttatagattttctaggtcttcctctgtctctagtgatt 40830318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 12966210 - 12966144
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatcta 71  Q
    |||||| | ||||||||||| || || |||||||||||||||||||||| ||||| |||||| ||||    
T  12966210 atccaaatcattaatctctaaatatttcttaatagtttctcttatagtttttctaggtcttcctcta 12966144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 38920852 - 38920785
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaacttcctc 197  Q
    ||||||||||||||| |||||||| |||||||  |||||||||    |||||| ||||||||||||| ||||    
T  38920852 acatgcccaaaccacttaagcctagtttccaccatcttttcta----ctataggtgctaccccaactccctc 38920785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30814771 - 30814836
Alignment:
Q  18 aatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    |||||||| ||||| |||||||||||||||||||||  ||||| |||||| |||  ||||||||||    
T  30814771 aatctctagatctttcttaatagtttctcttatagtgtttctaggtcttcctctgcctctagtgat 30814836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 7189450 - 7189494
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||| ||||||| ||  |||||||||||    
T  7189450 acatgcccaaaccacctaagcttattttctaccatcttttctact 7189494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 28628157 - 28628201
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||||||||||| |||||||||  || ||||||||    
T  28628157 acatgcccaaaccacctaagccaattttccaccatcatttctact 28628201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 30664763 - 30664715
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagt 52  Q
    ||||||||| ||||||||||| ||||| ||||||||||||| |||||||    
T  30664763 gatccaactcattaatctctagatctttcttaatagtttcttttatagt 30664715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 38135436 - 38135476
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttc 166  Q
    ||||| ||||||||||||||||||||||||||  |||||||    
T  38135436 acatgtccaaaccacctaagcctattttccaccatcttttc 38135476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 47848838 - 47848754
Alignment:
Q  35 aatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactaca 119  Q
    ||||||||||||||||||| |||||  ||||| |||  ||||||||||  || |  |||||||||| ||||| ||||||| ||||    
T  47848838 aatagtttctcttatagtttttctagttcttcctctgcctctagtgatcagactatcctccatctgatctactctccttagtaca 47848754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 30559888 - 30559762
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtc 103  Q
    ||||||||| ||||||||||| ||||| | | |||||||||||||||||| || |||||||||||||| |||||||||| ||| |  |||||||||| ||    
T  30559888 gatccaactcattaatctctaaatctttcctgatagtttctcttatagtttttttaagtcttcatctatctctagtgatccgactatcctccatctgatc 30559789  T
Q  104 taccctccttactacataatcaacatg 130  Q
     ||  ||||||||||| |||| |||||    
T  30559788 cactgtccttactacaaaatctacatg 30559762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 16351569 - 16351457
Alignment:
Q  9 caactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctacc 107  Q
    ||||| ||||||||||| ||| ||||||||||||||||| |||||| ||||| ||||||  ||| ||| ||||| | || | ||||||||||| |||||     
T  16351569 caactcattaatctctagatccttcttaatagtttctctaatagtttttctaggtcttctcctatctcaagtgacttgactcccctccatctgatctact 16351470  T
Q  108 ctccttactacat 120  Q
    |||||||||||||    
T  16351469 ctccttactacat 16351457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 10079995 - 10080114
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||||||| ||||| ||||| ||||| ||||||||||  |||| |||||| |||| ||||||||||| || | |||| ||| || |||    
T  10079995 atccaactcattaatctctagatctttcttaacagtttttcttatagtttctctaggtcttcctctacctctagtgatttgactccccttcatttgatct 10080094  T
Q  105 accctccttactacataatc 124  Q
    || |||||||||||| ||||    
T  10080095 actctccttactacaaaatc 10080114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 38178376 - 38178467
Alignment:
Q  33 ttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataatc 124  Q
    ||||||||||||||||||||| ||||| |||||| |||| |||||| |||| || |  |||||||||| ||||| |||||||||||| ||||    
T  38178376 ttaatagtttctcttatagtttttctaggtcttcctctacctctagcgatttgactatcctccatctgatctactctccttactacaaaatc 38178467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 2216482 - 2216405
Alignment:
Q  5 gatccaactgattaatctctatatcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||  || ||||| |||||| |||| ||||||||||    
T  2216482 gatccaactcattgatctctaaatcttcttaatagtttctcttatgttttttctaggtcttcctctacctctagtgat 2216405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 7531733 - 7531857
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||| ||||||| ||| ||| |||||||||||| ||||||| ||||| |||| |   || ||||||||||  || | ||||||||||| ||||    
T  7531733 tccaactcatttatctctagatccttcctaatagtttctcgtatagtttttctaggtctacccttacctctagtgatctgactcccctccatctgatcta 7531832  T
Q  106 ccctccttactacataatcaacatg 130  Q
    | ||||||||||||||||| |||||    
T  7531833 ctctccttactacataatccacatg 7531857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 29520844 - 29520725
Alignment:
Q  5 gatccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtc 103  Q
    ||||||||| ||||||||||| ||| ||| ||| |||||||||||||||| ||||| | |||| |||| |||| |||||| || |  |||||||||| ||    
T  29520844 gatccaactcattaatctctaaatcgttcctaacagtttctcttatagtttttctagg-cttcctctacctcttgtgatttgactatcctccatctgatc 29520746  T
Q  104 taccctccttactacataatc 124  Q
    ||| |||||||||||| ||||    
T  29520745 tactctccttactacaaaatc 29520725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 35643690 - 35643768
Alignment:
Q  2 ttcgatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagt 79  Q
    |||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| ||||| |||||| |||  |||||||    
T  35643690 ttcgatccaactcattaatctctagatctttcttaataatttctcttatagtttttctaggtcttcctctgcctctagt 35643768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 30198352 - 30198413
Alignment:
Q  4 cgatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtct 64  Q
    |||||||||| ||||||||| ||||||| ||||||| |||||||||||||| ||||||||||    
T  30198352 cgatccaactcattaatctcaatatctttcttaataatttctcttatagtttttctaagtct 30198413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 13589670 - 13589602
Alignment:
Q  9 caactgattaatctctatatcttct-taatagtttctcttatagttcttctaagtcttcatctaactct 76  Q
    ||||| |||||||| || ||||| | |||||||||||||||||||| ||||||||||||||||| ||||    
T  13589670 caactcattaatctttaaatcttttctaatagtttctcttatagtttttctaagtcttcatctacctct 13589602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 4011277 - 4011199
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    |||||||| |||||||| || ||||| |||||||||||||||||||||| ||||| |||||| |||  |||||| ||||    
T  4011277 atccaactcattaatctttagatctttcttaatagtttctcttatagtttttctaggtcttcctctgtctctagcgatt 4011199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 16917377 - 16917263
Alignment:
Q  6 atccaactgattaatctctatatcttc-ttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||||||| |||||| || |||||||| | ||||| | ||||| |||||| |||| || |||||||| || |  |||| ||||| |||    
T  16917377 atccaactcattaatctctaaatcttccttgatagtttcacctatagcttttctaggtcttcttctacctgtagtgatttgactatcctcaatctgatct 16917278  T
Q  105 accctccttactaca 119  Q
    || ||||||||||||    
T  16917277 actctccttactaca 16917263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 16994532 - 16994613
Alignment:
Q  6 atccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcga 86  Q
    |||||||| | ||||||||| ||| |||||||||||||||| ||||||| ||||| |||||| |||  ||| ||||||||||    
T  16994532 atccaactcaataatctctaaatcattcttaatagtttctcatatagtttttctaggtcttcctcttcctccagtgattcga 16994613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 16971843 - 16971899
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagt 62  Q
    ||||||| |||||||| |||||| |||||||| ||||||||||||||| ||||||||    
T  16971843 tccaactcattaatctttatatccttcttaatcgtttctcttatagtttttctaagt 16971899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 35643825 - 35643869
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||    
T  35643825 acatgcccaaaccacctaagcatattttccaccatcttttctact 35643869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 24739936 - 24739999
Alignment:
Q  6 atccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcat 68  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||| || ||||| ||| ||||    
T  24739936 atccaactgattaatctctacatctttctcaatagtttctcttataatttttctaggtcgtcat 24739999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 25985688 - 25985601
Alignment:
Q  29 cttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttact 116  Q
    ||||||||||||||| | | ||||| ||||| |||||| |||| ||||||||||| || | |||| |||||| ||||  |||||||||    
T  25985688 cttcttaatagtttcccatttagtttttctaggtcttcctctacctctagtgatttgactcccctacatctgatctagtctccttact 25985601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 28269766 - 28269829
Alignment:
Q  5 gatccaactgattaatctctatatcttcttaatagtttctcttatagttcttctaagtcttcat 68  Q
    ||||||||| ||||| ||||| |||||  ||||||||||||||||| || ||||| ||||||||    
T  28269766 gatccaactcattaacctctaaatcttgctaatagtttctcttataatttttctaggtcttcat 28269829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 29700438 - 29700351
Alignment:
Q  37 tagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataatc 124  Q
    ||||||||||| ||||| ||||| |||||| |||| ||||||||||  || |  |||||||||  ||||| |||||||||||| ||||    
T  29700438 tagtttctcttttagtttttctaggtcttcctctacctctagtgatatgactatcctccatctaatctactctccttactacagaatc 29700351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 38668126 - 38668075
Alignment:
Q  102 tctaccctccttactacataatcaacatgcccaaaccacctaagcctatttt 153  Q
    ||||| || |||||||||||||| ||||||||| ||||||||| ||||||||    
T  38668126 tctactcttcttactacataatctacatgcccagaccacctaaacctatttt 38668075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 39953376 - 39953471
Alignment:
Q  29 cttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataatc 124  Q
    |||| |||||||||||||| ||||| | ||| |||| |  ||| ||||||||||  ||||  ||| |||||| ||||| |||||||||||||||||    
T  39953376 cttcctaatagtttctcttttagttttcctaggtctacccctacctctagtgatctgattcgccttcatctgatctactctccttactacataatc 39953471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 79221 - 79143
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    ||||| || ||||||||||| ||||| |||||||||||||||||||||  ||||||| |||| |||   ||||||||||    
T  79221 atccagctcattaatctctagatctttcttaatagtttctcttatagtgtttctaagccttcctctgcttctagtgatt 79143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 13171875 - 13171917
Alignment:
Q  128 atgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  13171875 atgcccaaaccacctaagcatattttccaccatcttttctact 13171917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 23023419 - 23023353
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatcta 71  Q
    |||||||| |||||||| || ||||| |||| ||||||||||||||||| ||||| |||||| ||||    
T  23023419 atccaactcattaatctgtagatctttcttagtagtttctcttatagtttttctaggtcttcctcta 23023353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 32043760 - 32043670
Alignment:
Q  29 cttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactaca 119  Q
    |||||| ||||||||||| |||||| || || ||||||  ||| ||||||||||| ||   ||||||||||| ||||  ||||||||||||    
T  32043760 cttcttgatagtttctctaatagtttttttaggtcttcccctacctctagtgatttgacacccctccatctgatctattctccttactaca 32043670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 39967587 - 39967641
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttcta 59  Q
    |||||||| ||||||| ||| ||||| |||||||||||||||||||||| |||||    
T  39967587 atccaactcattaatcgctagatctttcttaatagtttctcttatagtttttcta 39967641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 45331681 - 45331775
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataatc 124  Q
    |||||||||| ||| || |||||| ||||| || ||| |||  ||| | ||||| |||  ||||||||||| ||||| |||||||||||||||||    
T  45331681 ttcttaataggttccctaatagtttttctaggttttcctctgcctcgattgatttgatgaccctccatctgatctactctccttactacataatc 45331775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 24399877 - 24399934
Alignment:
Q  6 atccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagt 62  Q
    |||||||| ||||||||| | ||| ||||||||||||||||||||| || ||||||||    
T  24399877 atccaactcattaatctcgagatccttcttaatagtttctcttataatttttctaagt 24399934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 30783126 - 30783207
Alignment:
Q  2 ttcgatccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    |||||||||||| ||||||||||| ||| |||| ||||||||||||||| ||| | |||  ||||| |||  ||||||||||    
T  30783126 ttcgatccaactcattaatctctagatctttctaaatagtttctcttatggttttactagatcttcctctgcctctagtgat 30783207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 45512612 - 45512661
Alignment:
Q  34 taatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    |||||||||||||||||||| ||||| |||||| |||  |||||||||||    
T  45512612 taatagtttctcttatagtttttctaggtcttcctctgcctctagtgatt 45512661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 6483315 - 6483271
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||||||||||| | |||||||  |||||||||||    
T  6483315 acatgcccaaaccacctaagccaagtttccaccctcttttctact 6483271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 9695689 - 9695645
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||||||||||| | |||||||  |||||||||||    
T  9695689 acatgcccaaaccacctaagccgagtttccaccatcttttctact 9695645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 9904969 - 9905041
Alignment:
Q  5 gatccaactgattaatctctatatcttc-ttaatagtttctcttatagttcttctaagtcttcatctaactct 76  Q
    ||||||| | |||||| |||| |||||  ||||||||||||||| ||||| ||||| ||||||||||| ||||    
T  9904969 gatccaaatcattaatttctaaatctttattaatagtttctcttgtagtttttctaggtcttcatctacctct 9905041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 16917242 - 16917198
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||||||||||||| ||| |||  |||||||||||    
T  16917242 acatgcccaaaccacctaagcctagtttgcaccatcttttctact 16917198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 50806861 - 50806750
Alignment:
Q  6 atccaactgattaatctctatatcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    |||||||  ||||||||||||  |||||| |||||||||||||| ||| ||||| |||||||||||  |||||||||| || | |||||||| || ||||    
T  50806861 atccaacgcattaatctctatc-cttcttgatagtttctcttattgtttttctaggtcttcatctacttctagtgatttgactcccctccatttgatcta 50806763  T
Q  106 ccctccttactac 118  Q
    |||||||||||||    
T  50806762 ccctccttactac 50806750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 50771645 - 50771763
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| |||||||||||  || |||||||||||||| ||||||||| ||||| ||||||  ||| ||||||| ||| || | ||||||||||| ||||    
T  50771645 tccaacttattaatctctaggtccttcttaatagtttcgcttatagtttttctaggtcttcccctacctctagtcatttgactcccctccatctgatcta 50771744  T
Q  106 ccctccttactacataatc 124  Q
    | |||||||||||| ||||    
T  50771745 ctctccttactacaaaatc 50771763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 3818947 - 3819056
Alignment:
Q  9 caactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctacc 107  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||| ||| | |||||| |||  |||||||| || |||| ||||||||||| |||||     
T  3818947 caactcattaatctctaaatctttcttaatagtttctcttatagtttttcaaggtcttcctctttctctagtggtttgattaccctccatctgatctact 3819046  T
Q  108 ctccttacta 117  Q
    ||| ||||||    
T  3819047 ctctttacta 3819056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 42501302 - 42501183
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| |||||||| || ||||| ||||||| |||||||||||||| ||||| || ||| |||| ||||| ||||| || | |||||||||||  ||    
T  42501302 atccaactcattaatctatagatctttcttaataatttctcttatagtttttctaggttttcctctacctctaatgatttgactaccctccatctgaact 42501203  T
Q  105 accctccttactacataatc 124  Q
    || |||||| ||||| ||||    
T  42501202 actctcctttctacagaatc 42501183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 8342969 - 8343047
Alignment:
Q  6 atccaactgattaatctctatatcttc-ttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    |||||||| ||||||||||| |||||  ||||| ||||||||||||||| ||||| |||||| |||| |||||||||||    
T  8342969 atccaactcattaatctctagatctttattaattgtttctcttatagtttttctaggtcttcctctatctctagtgatt 8343047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 6025799 - 6025690
Alignment:
Q  6 atccaactgattaatctctatatcttcttaa-tagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||||||| ||||| || | |||| |||||||||||| ||||| |||||| |||  ||||||||||| || | |||| |||||| |||    
T  6025799 atccaactcattaatctctagatcttttttactagtatctcttatagtttttctaggtcttcctctgcctctagtgatttgactaccctacatctgatct 6025700  T
Q  105 accctcctta 114  Q
    || |||||||    
T  6025699 actctcctta 6025690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 37463101 - 37463159
Alignment:
Q  130 gcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaact 192  Q
    ||||||||||||||||||||||||| |||||||||||||    |||||| |||||||||||||    
T  37463101 gcccaaaccacctaagcctattttctactgtcttttcta----ctataggtgctaccccaact 37463159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 43898400 - 43898304
Alignment:
Q  28 tcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataatc 124  Q
    |||||| ||||||||||||||||||| ||| | |||||   ||| || | |||||| || | ||||||||||| ||||| |||||||||||||||||    
T  43898400 tcttctaaatagtttctcttatagtttttccaggtctttccctacctttggtgatttgactcccctccatctgatctactctccttactacataatc 43898304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 48431630 - 48431674
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  48431630 acatgcccaaaccacctaagcctattttccaccatcttttctact 48431674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 40416569 - 40416446
Alignment:
Q  2 ttcgatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctg 100  Q
    |||||||||||| |||||||| || ||||| ||||||||||| |||||||||| ||||| |||||| |||  || | |||||  || |  ||| ||||||    
T  40416569 ttcgatccaactcattaatctatagatctttcttaatagtttgtcttatagtttttctaggtcttcttctgtctttggtgatctgactatcctgcatctg 40416470  T
Q  101 gtctaccctccttactacataatc 124  Q
     ||||| |||||||||||| ||||    
T  40416469 atctactctccttactacaaaatc 40416446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 43423913 - 43423794
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| | ||||||||| ||||| |||||| || |||||| || || ||||| |||||| |||| ||||||||||| || | |  ||||||| ||||    
T  43423913 atccaactcactaatctctagatctttcttaatggtctctcttgtaatttttctaggtcttcctctacctctagtgatttgactactatccatctagtct 43423814  T
Q  105 accctccttactacataatc 124  Q
    || || ||||||||||||||    
T  43423813 actctacttactacataatc 43423794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 12261802 - 12261920
Alignment:
Q  7 tccaactgattaatctcta-tatcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||||||| ||| | |||||||| ||||||||||||||||| ||||| |||||   | | ||||||||||| || |  |||||||| | ||||    
T  12261802 tccaactaattaatccctaatttcttcttactagtttctcttatagtttttctaggtcttaccccacctctagtgatttgactctcctccatcagatcta 12261901  T
Q  106 ccctccttactacataatc 124  Q
    ||||| |||||||| ||||    
T  12261902 ccctcattactacaaaatc 12261920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 14226053 - 14226095
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttcta 168  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  14226053 acatgcccaaaccacctaagcctattttccaccatcttttcta 14226095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 28528548 - 28528430
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||||||||||| ||| ||||||||||||||| |||||||| || || ||||||  |||  ||||| |||| || | |||||||| || ||||    
T  28528548 tccaactcattaatctctagatccttcttaatagtttctgttatagtttttttaggtcttcccctacttctagggatttgactcccctccatttgatcta 28528449  T
Q  106 ccctccttactacataatc 124  Q
    |  ||||||||||| ||||    
T  28528448 ctgtccttactacagaatc 28528430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 8203223 - 8203288
Alignment:
Q  7 tccaactgattaatctctatatcttctt-aatagtttctcttatagttcttctaagtcttcatcta 71  Q
    ||||||| ||||||||||| ||||| || ||||||||||||||||||| ||||| |||||| ||||    
T  8203223 tccaactcattaatctctagatcttttttaatagtttctcttatagtttttctaggtcttcttcta 8203288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 15577612 - 15577535
Alignment:
Q  6 atccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||  || || ||  ||||| |||| ||||||||||    
T  15577612 atccaactcattaatctctatatccttcttaatagtttctcttattatttttttagatcttcctctacctctagtgat 15577535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 30834065 - 30834174
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||||||| ||||| | |||||||||||||||||| | ||||| |||||| |||  |||||  |||| || | || |||||||| |||    
T  30834065 atccaactcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtcttcctctccctctatcgatttgactaccttccatctgatct 30834164  T
Q  105 accctcctta 114  Q
    || |||||||    
T  30834165 actctcctta 30834174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 19969301 - 19969361
Alignment:
Q  7 tccaactgattaatctctatatcttc-ttaatagtttctcttatagttcttctaagtcttc 66  Q
    ||||||| ||||||||||| |||||  ||||||||||||||||||||| ||||| ||||||    
T  19969301 tccaactcattaatctctagatctttgttaatagtttctcttatagtttttctaggtcttc 19969361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 32404618 - 32404726
Alignment:
Q  10 aactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccc 108  Q
    |||| ||||||||||| ||||| | |||||||||||||||||||| || || |||||| |||| |||| |||||  || |  |||||||||  ||||| |    
T  32404618 aactcattaatctctaaatctttcctaatagtttctcttatagtttttgtaggtcttcctctacctcttgtgatatgactatcctccatcttctctactc 32404717  T
Q  109 tccttacta 117  Q
    |||||||||    
T  32404718 tccttacta 32404726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 33560957 - 33561065
Alignment:
Q  17 taatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttac 115  Q
    ||||||||| ||||| |||||||||||| |||| |||| ||||| | |||| |||  ||||||||||| || | |||||||||   ||||| ||||||||    
T  33560957 taatctctagatcttacttaatagtttcccttacagtttttctaggacttcctctgcctctagtgatttgactaccctccatcatatctactctccttac 33561056  T
Q  116 tacataatc 124  Q
    |||| ||||    
T  33561057 tacagaatc 33561065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 37263523 - 37263415
Alignment:
Q  7 tccaactgattaatctctatatcttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctac 106  Q
    ||||||| ||| ||||||| |||||||| |||||||| || |||||  ||||| ||||||  ||| ||||||||||| ||   ||||||||||| | |||    
T  37263523 tccaactcattgatctctagatcttcttgatagtttcactaatagtatttctaggtcttcccctacctctagtgatttgacacccctccatctgatttac 37263424  T
Q  107 cctccttac 115  Q
     ||||||||    
T  37263423 tctccttac 37263415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 51584912 - 51584860
Alignment:
Q  31 tcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    ||||||||||||||||||||||| ||||| ||||||  ||| |||||||||||    
T  51584912 tcttaatagtttctcttatagtttttctaggtcttcccctacctctagtgatt 51584860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 52561676 - 52561748
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactct 76  Q
    ||||||||| ||||| ||||| ||||| | ||| |||||||||||||||| |||||||||||| |||| ||||    
T  52561676 gatccaactcattaacctctaaatctttcctaacagtttctcttatagtttttctaagtcttcctctacctct 52561748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 853873 - 853992
Alignment:
Q  6 atccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| | ||||||||| ||| |||||||||||||||| ||||| | || || |||||| |||  ||||||||||| || |   || ||||||||      
T  853873 atccaactcactaatctctagatccttcttaatagtttctcgtatagattttttaggtcttcctctgcctctagtgatttgactaatcttcatctggtaa 853972  T
Q  105 accctccttactacataatc 124  Q
    || |||||||||||||||||    
T  853973 actctccttactacataatc 853992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 38869076 - 38868969
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||  ||||||| ||| ||||| ||||||| |||||||||||||| ||||| |||||| |||  ||||| ||||| || | ||||||||||  |||    
T  38869076 atccaacccattaatcgctagatctttcttaataatttctcttatagtttttctaggtcttcttctgcctctaatgatttgactaccctccatctaatct 38868977  T
Q  105 accctcct 112  Q
    || |||||    
T  38868976 actctcct 38868969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 12231559 - 12231481
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    |||||||| ||||||||| | ||||| ||||||||| |||||||||||| |||||||| ||| || | || ||||||||    
T  12231559 atccaactcattaatctcgagatctttcttaatagtctctcttatagtttttctaagtattcctccacctttagtgatt 12231481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 29577229 - 29577307
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    |||||| || ||||||||||| ||||| ||||||||||| | || ||||| ||||| |||||| |||| ||||||||||    
T  29577229 gatccagctcattaatctctagatctttcttaatagtttatgttgtagtttttctaggtcttcctctacctctagtgat 29577307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 52160356 - 52160438
Alignment:
Q  37 tagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactaca 119  Q
    ||||||||||||||||| ||||  |||||||| |  ||||||||||| || | |||||||||| |||||| ||  ||||||||    
T  52160356 tagtttctcttatagtttttctctgtcttcatatgcctctagtgatttgactaccctccatctagtctactcttgttactaca 52160438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 2544761 - 2544681
Alignment:
Q  36 atagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttacta 117  Q
    ||||||||||| |||||| ||||| |||||| |||| |||||||| || || |  |||||||||| ||||| ||||||||||    
T  2544761 atagtttctctgatagtttttctaggtcttcctctacctctagtg-tttgactatcctccatctgatctactctccttacta 2544681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 10272428 - 10272339
Alignment:
Q  29 cttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactac 118  Q
    ||||||||||||||||||||||  | ||||| ||||||  ||| ||||||||||| || | || |||||||| ||| | |||||| ||||    
T  10272428 cttcttaatagtttctcttataagttttctaggtcttcccctacctctagtgatttgactcccatccatctgatctcctctccttcctac 10272339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 52442640 - 52442717
Alignment:
Q  29 cttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctac 106  Q
    |||||| ||||||||||||||| || ||||| |||||| |||| |||||| |||| || | || |||||||| |||||    
T  52442640 cttcttgatagtttctcttatatttgttctaggtcttcctctacctctagagatttgactcccttccatctgatctac 52442717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 7922031 - 7921940
Alignment:
Q  6 atccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccat 97  Q
    |||||||| ||||||||||| ||| || ||| |||||||| |||||||| ||  | ||||||||||| |||||||||||  |||| |||||||    
T  7922031 atccaactcattaatctctagatcgtttttactagtttcttttatagtt-ttgaaggtcttcatctacctctagtgatttaattgtcctccat 7921940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 36339920 - 36339968
Alignment:
Q  34 taatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    ||||||||||||| |||||| ||||| |||||| |||| ||||||||||    
T  36339920 taatagtttctctgatagtttttctaggtcttcctctacctctagtgat 36339968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 43423777 - 43423733
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||| |||||||||||||||||| |||||||  |||||||||||    
T  43423777 acatggccaaaccacctaagcctagtttccaccatcttttctact 43423733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 44905556 - 44905600
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||| ||||||||||||||| ||||||| || ||||||||||||    
T  44905556 acatgtccaaaccacctaagcatattttctaccgtcttttctact 44905600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 47147567 - 47147448
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||||||| ||||| |||||||||||||  ||||||| ||||| |||||| |||  |||||||||| ||| | | ||||||||| | |    
T  47147567 atccaactcattaatctctagatctttcttaatagtttcttctatagtttttctaggtcttcctctgcctctagtgatccgactactctccatctgattt 47147468  T
Q  105 accctccttactacataatc 124  Q
    || |||||||||||||||||    
T  47147467 actctccttactacataatc 47147448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 26356811 - 26356699
Alignment:
Q  8 ccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctac 106  Q
    |||||| ||||||||||| ||| ||| ||| |||||||||||||||| ||||| ||||||  ||| ||||||||||| || | ||||||||| | |||||    
T  26356811 ccaactcattaatctctagatccttcataacagtttctcttatagtttttctaggtcttcccctacctctagtgatttgactcccctccatccgatctac 26356712  T
Q  107 cctccttactaca 119  Q
     ||||||||||||    
T  26356711 tctccttactaca 26356699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 28351754 - 28351639
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtc 103  Q
    ||||||||| | ||||||||| ||||| | |||||||||||||||||||| ||||| |||||  |||| |||| || ||  || |  |||||||||| ||    
T  28351754 gatccaactcaataatctctaaatctttcgtaatagtttctcttatagtttttctaggtctttctctacctcttgtaatctgactatcctccatctgatc 28351655  T
Q  104 taccctccttactaca 119  Q
    ||| ||||||||||||    
T  28351654 tactctccttactaca 28351639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 10209229 - 10209171
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtct 64  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||| ||||    
T  10209229 tccaactcattaatctctagatccttcttaatagtttctcttatagtttttctaggtct 10209171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 21945755 - 21945872
Alignment:
Q  34 taatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataa--tcaacatgc 131  Q
    ||||||||||| | |||||| ||||| |||||| ||   ||||||||||  || |  |||||||||| ||||| |||||||||||| ||  || |||||     
T  21945755 taatagtttctatgatagtttttctaggtcttcctcagcctctagtgatgtgactatcctccatctgatctactctccttactacagaatctctacatgt 21945854  T
Q  132 ccaaaccacctaagccta 149  Q
    ||||||||||||||||||    
T  21945855 ccaaaccacctaagccta 21945872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 25967359 - 25967461
Alignment:
Q  16 ttaatctctatatcttctt-aatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctcctta 114  Q
    |||||||||| ||||| || ||||||||||||||||||| ||| |||||||| |||  |||||||||||  | |  ||| |||||| ||||| |||||||    
T  25967359 ttaatctctagatcttttttaatagtttctcttatagttattcaaagtcttcctctgtctctagtgatttaactatccttcatctgatctactctcctta 25967458  T
Q  115 cta 117  Q
    |||    
T  25967459 cta 25967461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 18966774 - 18966721
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    |||||||||||||||||||||||| || || |||||| |||| |||||||||||    
T  18966774 ttcttaatagtttctcttatagttgttttaggtcttcttctacctctagtgatt 18966721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 40018277 - 40018378
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||| ||||||| ||||| ||||| ||||| |||||||||| ||||||||||| || |  ||||||||||| || | |||| |||||| |||    
T  40018277 atccaactcattgatctctagatctttcttaacagtttttcttatagtttttctaagtctttatttgcctctagtgatttgactacccttcatctgatct 40018376  T
Q  105 ac 106  Q
    ||    
T  40018377 ac 40018378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 20047629 - 20047581
Alignment:
Q  6 atccaactgattaatctctatatcttctt-aatagtttctcttatagtt 53  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  20047629 atccaactcattaatctctagatcttctttaatagtttctcttatagtt 20047581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 31459088 - 31459044
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||    
T  31459088 acatgcccaaaccacctaagcctattttctaccatcttttctact 31459044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 38570971 - 38571015
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||    
T  38570971 acatgcccaaaccacctaagcctagtttccactatcttttgtact 38571015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 47611785 - 47611741
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||||||||||||||||||||   |||||||||||    
T  47611785 acatgcccaaaccacctaagcctattttccatcatcttttctact 47611741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 49987486 - 49987442
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||    
T  49987486 acatgaccaaaccacctaagcctattttccaccatcttttctact 49987442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 26024935 - 26024986
Alignment:
Q  3 tcgatccaactgattaatctctatatc-ttcttaatagtttctcttatagtt 53  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||| |||||||    
T  26024935 tcgatccaactcattaatctctagatctttcttaatagtttctcatatagtt 26024986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 42639108 - 42639227
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtct 104  Q
    |||||||| ||||||| ||| ||||| ||||||||||||||||  |||| |||||  | ||| |||| ||||||||||| || | ||||||||||  | |    
T  42639108 atccaactcattaatcgctagatctttcttaatagtttctcttgcagtttttctagatattcctctacctctagtgatttgactcccctccatctaattt 42639207  T
Q  105 accctccttactacataatc 124  Q
    |||| |||||| ||| ||||    
T  42639208 accccccttaccacagaatc 42639227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 49987577 - 49987526
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtga 81  Q
    |||||||||||||||||||||||| ||||| |||||| |||  |||||||||    
T  49987577 ttcttaatagtttctcttatagtttttctaggtcttcctctgcctctagtga 49987526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 31897517 - 31897635
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||| ||||||| ||| ||| |||||||||||||||||||| ||||| |||| |  ||| ||||||||||  || | ||||||||||  || |    
T  31897517 tccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgatctgactcccctccatctaatcga 31897616  T
Q  106 ccctccttactacataatc 124  Q
    | ||||| |||||| ||||    
T  31897617 ctctcctaactacagaatc 31897635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 31961355 - 31961473
Alignment:
Q  7 tccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtcta 105  Q
    ||||||| ||| ||||||| ||||| | |||||||||||||||||||| ||||| |||| |  ||| ||||||||||| || | | ||||||||  || |    
T  31961355 tccaactcatttatctctagatctttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgatttgactcctctccatctaatcca 31961454  T
Q  106 ccctccttactacataatc 124  Q
    | ||||| |||||| ||||    
T  31961455 ctctcctaactacagaatc 31961473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 45204926 - 45204988
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttc 66  Q
    ||||||||| ||||| ||||| ||||| | |||||||||||||||||||| ||||| ||||||    
T  45204926 gatccaacttattaaactctaaatctttcctaatagtttctcttatagtttttctaggtcttc 45204988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 45569097 - 45569178
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcga 86  Q
    |||||||| ||| ||||||| || || ||||||||||||||||||| |  ||||| |||||| |||  ||||||||||||||    
T  45569097 atccaactcattgatctctagatttttcttaatagtttctcttataatgtttctaggtcttcctctgcctctagtgattcga 45569178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 48033254 - 48033201
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    |||||||||||||||||||||||| |  ||||||||| |||  |||||||||||    
T  48033254 ttcttaatagtttctcttatagttttcttaagtcttcctctgcctctagtgatt 48033201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 50680936 - 50680875
Alignment:
Q  4 cgatccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtct 64  Q
    |||||||||| ||||||||||| ||| |||| |||| |||||||||||||| ||||| ||||    
T  50680936 cgatccaactcattaatctctagatctttctaaataatttctcttatagtttttctaggtct 50680875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 8599054 - 8599090
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttc 66  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  8599054 ttcttaatagtttctcttatagtttttctaggtcttc 8599090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 28236241 - 28236197
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||| |||||||||||||||||   ||||||||||    
T  28236241 acatgcccaaaccatctaagcctattttccaccaacttttctact 28236197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 28497547 - 28497504
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||    
T  28497547 acatgcccaaaccacctaagcct-ttttccacaatcttttctact 28497504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 35690350 - 35690322
Alignment:
Q  126 acatgcccaaaccacctaagcctattttc 154  Q
    |||||||||||||||||||||||||||||    
T  35690350 acatgcccaaaccacctaagcctattttc 35690322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 37488286 - 37488226
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtct 64  Q
    |||| |||| |||||| |||| ||||| |||||||||||||||||||||| ||||| ||||    
T  37488286 gatcaaacttattaatttctagatctttcttaatagtttctcttatagtttttctaggtct 37488226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 37773675 - 37773719
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||| |||||||||||||| || | ||||||||||    
T  37773675 acatgcccaaaccatctaagcctattttctaccgacttttctact 37773719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 38903831 - 38903870
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatct 70  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  38903831 ttcttaatagtttctcttatagtt-ttctaggtcttcatct 38903870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 46372217 - 46372141
Alignment:
Q  7 tccaactgattaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgat 82  Q
    ||||||| ||| ||||||| ||| ||| |||||||||||||||||||| ||||| |||| |  ||| ||||||||||    
T  46372217 tccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgat 46372141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 51252685 - 51252729
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||| |||||||||||||| |||||||  |||||||||||    
T  51252685 acatgcccataccacctaagcctagtttccaccatcttttctact 51252729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 51421925 - 51421853
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactct 76  Q
    ||||||| | ||||| ||||| ||||| | |||||||||||||||||||| |||||| ||||| |||| ||||    
T  51421925 gatccaattcattaacctctaaatctttcctaatagtttctcttatagtttttctaaatcttcctctacctct 51421853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 178509 - 178568
Alignment:
Q  7 tccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtctt 65  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||    
T  178509 tccaactcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctt 178568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 44092 - 44154
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaact 192  Q
    |||||||||||||||||||||||||||||| |  |||||||||    |||||| |||||||||||||    
T  44092 acatgcccaaaccacctaagcctattttccgccatcttttcta----ctataggtgctaccccaact 44154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 39600768 - 39600840
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactct 76  Q
    ||||||||| ||||| ||||| ||||| |||||||||||||||||||||| ||||| |||||| |||| ||||    
T  39600768 gatccaactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggtcttcctctacctct 39600840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 42510238 - 42510282
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||    
T  42510238 acatgtccaaaccacctaagcctattttccactatcttttctact 42510282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 45289318 - 45289379
Alignment:
Q  129 tgcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaact 192  Q
    |||||||||||||||||||||||||||||  ||||||||||||   |||| |||||||||||||    
T  45289318 tgcccaaaccacctaagcctattttccaccatcttttctactg--aataggtgctaccccaact 45289379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 11581613 - 11581520
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataat 123  Q
    |||||||||||||||||||||||| ||||| ||||||   || ||||||||||| || |  ||| |||||| | ||| || |||||||||||||    
T  11581613 ttcttaatagtttctcttatagtttttctaggtcttctcatacctctagtgatttgactcacctacatctgatgtactcttcttactacataat 11581520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 40116552 - 40116617
Alignment:
Q  2 ttcgatccaactgattaatctctatatct-tcttaatagtttctcttatagttcttctaagtcttc 66  Q
    |||| ||||||| ||||||||||| |||| || |||||||||||||||||||| ||||| ||||||    
T  40116552 ttcggtccaactcattaatctctaaatctatcctaatagtttctcttatagtttttctaggtcttc 40116617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 50960857 - 50960919
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctaccccaact 192  Q
    ||||||||||||||||||||||||||||| ||  |||||||||    |||||| |||||||||||||    
T  50960857 acatgcccaaaccacctaagcctattttctaccatcttttcta----ctataggtgctaccccaact 50960919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 36820067 - 36820119
Alignment:
Q  8 ccaactgattaatctctatatctt-cttaatagtttctcttatagttcttcta 59  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||| |||||    
T  36820067 ccaactcattaatctctagatctttcttaatagtttctcttatagtttttcta 36820119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 37351592 - 37351488
Alignment:
Q  15 attaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctcctt 113  Q
    ||||||||||| ||||| ||| || |||||||| |||||| ||||| ||||||  ||| ||||||||||| |  | || |||||||| ||||| ||||||    
T  37351592 attaatctctagatctttcttgattgtttctctaatagtttttctaggtcttcccctacctctagtgatttgcctcccttccatctgatctactctcctt 37351493  T
Q  114 actac 118  Q
    |||||    
T  37351492 actac 37351488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 43308756 - 43308696
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtctt 65  Q
    |||||||||||||||||||| || || |||||||||||||||| ||||| ||||| |||||    
T  43308756 atccaactgattaatctctagatttttcttaatagtttctcttgtagtttttctaggtctt 43308696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 49503778 - 49503822
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||    
T  49503778 acatgcccaaaccacctaagcctattttctaccatcttttctact 49503822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 54128436 - 54128392
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||    
T  54128436 acatgcccaaaccacctaagcctattttctaccatcttttctact 54128392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 19162675 - 19162746
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactct 76  Q
    |||||||| ||||||||||| ||||| | |||||||||||||||||| | | ||| |||||| |||||||||    
T  19162675 atccaactcattaatctctaaatctttcctaatagtttctcttatagatttcctaggtcttcctctaactct 19162746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 31261055 - 31261153
Alignment:
Q  30 ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactacataatcaacat 129  Q
    ||||| |||||||||||||||||| ||||| |||||| |||  ||||||||||| || |  |||||||||| ||||| | | |||||||| |||| ||||    
T  31261055 ttcttgatagtttctcttatagtttttctaggtcttcctctgcctctagtgatttgact-acctccatctgatctactcacattactacaaaatctacat 31261153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 46431897 - 46431940
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctac 169  Q
    |||||||||||||||||||||| | |||||| ||||||||||||    
T  46431897 acatgcccaaaccacctaagccgagtttccattgtcttttctac 46431940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 33272246 - 33272308
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctactgtctatagctgctacccc 188  Q
    |||||||||||||| |||||||||||||| ||   |||||||||| | ||||| |||||||||    
T  33272246 acatgcccaaaccatctaagcctattttctaccaacttttctactatatataggtgctacccc 33272308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 39235196 - 39235154
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttcta 168  Q
    ||||||||||||||||||||||||||||| ||  |||||||||    
T  39235196 acatgcccaaaccacctaagcctattttctaccatcttttcta 39235154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 46431767 - 46431821
Alignment:
Q  6 atccaactgattaatctctatatcttctt-aatagtttctcttatagttcttcta 59  Q
    |||||||| ||||||||||| ||||| || ||||||||||||||||||| |||||    
T  46431767 atccaactcattaatctctagatcttttttaatagtttctcttatagtttttcta 46431821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 2340814 - 2340883
Alignment:
Q  15 attaatctctatatctt-cttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    ||||||||||| ||||| |||||||||||||||||||||| | ||| |||||  |||| || ||||||||    
T  2340814 attaatctctagatctttcttaatagtttctcttatagttttcctaggtctttctctagctttagtgatt 2340883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 45289178 - 45289227
Alignment:
Q  5 gatccaactgattaatctctatatctt-cttaatagtttctcttatagtt 53  Q
    ||||||||| ||||||||||| ||||| | ||||||||||||||||||||    
T  45289178 gatccaactcattaatctctaaatctttcctaatagtttctcttatagtt 45289227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 21200606 - 21200562
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    |||||||||||||||||||| ||| |||||||  |||||||||||    
T  21200606 acatgcccaaaccacctaagtctagtttccaccatcttttctact 21200562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 26490373 - 26490329
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||| ||||||||||||||||||||||| ||  |||||||||||    
T  26490373 acatgtccaaaccacctaagcctattttctaccatcttttctact 26490329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 37534430 - 37534474
Alignment:
Q  126 acatgcccaaaccacctaagcctattttccactgtcttttctact 170  Q
    ||||||||||||||  ||||||||||||||||  |||||||||||    
T  37534430 acatgcccaaaccaggtaagcctattttccaccatcttttctact 37534474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 38431012 - 38430928
Alignment:
Q  35 aatagtttctcttatagttcttctaagtcttcatctaactctagtgattcgattgccctccatctggtctaccctccttactaca 119  Q
    ||||||||||||| ||||| |||||||||||| |||| ||||  ||||| || |  |||||||||| ||||| || | |||||||    
T  38431012 aatagtttctcttgtagtttttctaagtcttcctctacctcttttgatttgactctcctccatctgatctactcttcatactaca 38430928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 41452828 - 41452888
Alignment:
Q  6 atccaactgattaatctctatatctt-cttaatagtttctcttatagttcttctaagtctt 65  Q
    |||||||| ||||||||||| ||||| |||||||||||  ||||||||| ||||| |||||    
T  41452828 atccaactcattaatctctagatctttcttaatagtttaacttatagtttttctatgtctt 41452888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 48734359 - 48734387
Alignment:
Q  126 acatgcccaaaccacctaagcctattttc 154  Q
    |||||||||||||||||||||||||||||    
T  48734359 acatgcccaaaccacctaagcctattttc 48734387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 11982 - 11913
Alignment:
Q  15 attaatctctatatc-ttcttaatagtttctcttatagttcttctaagtcttcatctaactctagtgatt 83  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||  ||||| | |  |||||||||||    
T  11982 attaatctctagatccttcttaatagtttctcttatagtttttctagttcttcttttgcctctagtgatt 11913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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