View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9639_low_28 (Length: 229)
Name: NF9639_low_28
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9639_low_28 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38341276 - 38341504
Alignment:
| Q |
1 |
tcaaaatcatataaatcttaaccaggaatgaattcataaaaattgaaaaggtggacaaaaaggtaaacccaaaataacattaatcaattatttaattcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38341276 |
tcaaaatcatataaatcttaaccaggaatgaattcataaaaattgaaaagggggacaaaaaggtaaacccaaaataacattaatcaattatttaattcca |
38341375 |
T |
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| Q |
101 |
aataatctaataacaaaagtaatttaacacaaaaaagaattcaagaaacaaacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38341376 |
aataatctaataacaaaagtaatttaacacaaaaaagaattcaagaaacaaacaacaaccaacccttatcccactaaatagcgtcgactacgtagatcaa |
38341475 |
T |
|
| Q |
201 |
attaaattacgtcataatgttctatcata |
229 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
38341476 |
attaaattacgtcataatgttctatcata |
38341504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 38341767 - 38341813
Alignment:
| Q |
69 |
ccaaaataacattaatcaattatttaattccaaataatctaataaca |
115 |
Q |
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| T |
38341767 |
ccaaaataacatgaatcaactatttaattccaaagattctaataaca |
38341813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 5860114 - 5860061
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaatta |
204 |
Q |
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|||||||| ||| |||||||||||||| ||| |||| |||| |||||||||||| |
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| T |
5860114 |
aacaacaatcaagccttatcccactaagtagggtcggctacatagatcaaatta |
5860061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 14665992 - 14665939
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaatta |
204 |
Q |
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| T |
14665992 |
aacaacaaccaagccttatcccactaagtggggtcggctacatagatcaaatta |
14665939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 5418354 - 5418301
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaatta |
204 |
Q |
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|||||||||||| |||||||||||||||| | ||||||||| | |||||||||| |
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| T |
5418354 |
aacaacaaccaagccttatcccactaaatggggtcgactacatggatcaaatta |
5418301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 36101779 - 36101852
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaattaaattacgtcataatgttctatcata |
229 |
Q |
| |
|
|||||||||||| |||||||||||||| | | ||| ||||| | |||| |||||||||||||||||||||||||| |
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| T |
36101779 |
aacaacaaccaagccttatcccactaagtggggtcaactacatggatc-----aaattacgtcataatgttctatcata |
36101852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 1011326 - 1011273
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaatta |
204 |
Q |
| |
|
|||||||||||| |||||||||||||| | | |||| |||| |||||||||||| |
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| T |
1011326 |
aacaacaaccaagccttatcccactaagtggggtcggctacatagatcaaatta |
1011273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 37462873 - 37462931
Alignment:
| Q |
146 |
aaacaaacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaatta |
204 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | | |||| |||| | |||||||||| |
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| T |
37462873 |
aaacaaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatta |
37462931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 34444636 - 34444583
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaatta |
204 |
Q |
| |
|
|||||||||||| |||||||||||||| | | |||| |||| |||||||||||| |
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|
| T |
34444636 |
aacaacaaccaagccttatcccactaagtggggtcggctacatagatcaaatta |
34444583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 35324053 - 35324000
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaatta |
204 |
Q |
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|
|||||||||||| |||||||||||||| | | |||| |||||| |||||||||| |
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| T |
35324053 |
aacaacaaccaagccttatcccactaagtggggtcggctacgtggatcaaatta |
35324000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 49503570 - 49503623
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaatta |
204 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| |||| |||| | |||||||||| |
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| T |
49503570 |
aacaacaaccaagccttatcccactaagtagggtcggctacatggatcaaatta |
49503623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 12734980 - 12734927
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactacgtagatcaaatta |
204 |
Q |
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|
|||||||||||| |||||||||||||| | | ||||||||| | |||||||||| |
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| T |
12734980 |
aacaacaaccaagccttatcccactaagtggggtcgactacatggatcaaatta |
12734927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 28960213 - 28960253
Alignment:
| Q |
151 |
aacaacaaccaacccttatcccactaaatagtgtcgactac |
191 |
Q |
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|||||||||||| |||||||||||||||| | ||||||||| |
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| T |
28960213 |
aacaacaaccaagccttatcccactaaatggagtcgactac |
28960253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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