View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9639_low_3 (Length: 432)

Name: NF9639_low_3
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9639_low_3
NF9639_low_3
[»] chr8 (4 HSPs)
chr8 (1-414)||(12844925-12845348)
chr8 (8-67)||(43038666-43038725)
chr8 (2-66)||(29635301-29635365)
chr8 (287-318)||(2822721-2822752)
[»] chr2 (3 HSPs)
chr2 (3-414)||(10913820-10914251)
chr2 (251-280)||(18601530-18601559)
chr2 (2-67)||(20355370-20355435)
[»] chr6 (2 HSPs)
chr6 (1-264)||(10365916-10366194)
chr6 (279-406)||(10366181-10366313)
[»] chr1 (3 HSPs)
chr1 (7-200)||(39937774-39937977)
chr1 (22-64)||(30724319-30724361)
chr1 (287-318)||(44827910-44827941)
[»] chr3 (2 HSPs)
chr3 (1-67)||(28884845-28884911)
chr3 (2-67)||(41766035-41766100)
[»] chr4 (2 HSPs)
chr4 (3-63)||(34841485-34841545)
chr4 (3-63)||(43277819-43277879)
[»] chr7 (2 HSPs)
chr7 (2-67)||(11314873-11314938)
chr7 (287-318)||(38369494-38369525)
[»] chr5 (3 HSPs)
chr5 (21-65)||(35877753-35877797)
chr5 (287-318)||(8205530-8205561)
chr5 (249-283)||(39888141-39888175)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 12844925 - 12845348
Alignment:
Q  1 ggttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagagag-------ttagaacatgtgggatcctcactttt 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||  ||||||||||    
T  12844925 ggttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagagagaagagagtaagaacatgtggggccctcactttt 12845024  T
Q  94 tagagtcttcccacatgtgagaagaaagaggctagagatgctacttattgttgcttttccaattctaccctctcattgtgttataaaagacaagaaaatg 193  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12845025 tagagtcttcccacatgtgagaagaaagaggcgagagatgctacttgttgttgcttt-ccaattctaccctctcattgtgttataaaagacaagaaaatg 12845123  T
Q  194 gttttgcaggttatattattgttggtaatgttctttcgaatgttgttattttcattgttgagctaatataaaaataatagta-tttttgagctaatataa 292  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  12845124 gttttgcaggttatactattgttggtaatgttctttcaaatgttgctattttcattgttgaactaatataaaaataatagtattttttgagctaatataa 12845223  T
Q  293 tttgaaagtgaatttaggagaagcta---nnnnnnngcatcaagggtaagctggttgtggtattcgtaactttttcttttgttgtacatgtattcgtatt 389  Q
    ||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12845224 tttgaaagtgaatttaggagaagatattttttttttgcatcaagggtaagctggttgtggtattcgtaactttttcttttgttgtacatgtattcgtatt 12845323  T
Q  390 ttgtaacgttaaataccggtatttt 414  Q
    || |||||||||||| |||||||||    
T  12845324 ttataacgttaaatatcggtatttt 12845348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 43038666 - 43038725
Alignment:
Q  8 gagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagagag 67  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||| ||||    
T  43038666 gagagagaggttgaagagaaatccaacacttctcttatttgatagaggtgagaaatagag 43038725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 29635301 - 29635365
Alignment:
Q  2 gttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagaga 66  Q
    ||||||||||||||| | | |||||| ||| |||||||||||||||||| | |||||||||||||    
T  29635301 gttgaagagagagaaataggagagaagtcccacacttctcttgtttggttgtggtgagaaagaga 29635365  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Complemental strand, 2822752 - 2822721
Alignment:
Q  287 atataatttgaaagtgaatttaggagaagcta 318  Q
    ||||||||||||||||||||||||||||||||    
T  2822752 atataatttgaaagtgaatttaggagaagcta 2822721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 414
Target Start/End: Complemental strand, 10914251 - 10913820
Alignment:
Q  3 ttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagagag---------ttagaacatgtgggatcctcactttt 93  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         | ||||||||||||  ||||||||||    
T  10914251 ttgaagagagagaagttgaagagaaatccaacacttcccttgtttggtaggggtgagaaagagagaagagagagtaagaacatgtggggccctcactttt 10914152  T
Q  94 tagagtcttcccacatgtgagaagaaagaggct------agagatgctacttattgttgcttttccaattctaccctctcattgtgttataaaagacaag 187  Q
    |||||||||||||||||||||||||||||||||      ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  10914151 tagagtcttcccacatgtgagaagaaagaggctcaggtgagagatgttacttgttgttgcttt-ccaattctaccctctcattgtgttataaaagacaag 10914053  T
Q  188 aaaatggttttgcaggttatattattgttggtaatgttctttcgaatgttgttattttcattgttgagctaatataaaaataatagtat-ttttgagcta 286  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  10914052 aaaatggttttgcaggttatactattgttggtaatgttctttcaaatgttgctattttcattgttgaactaatataaaaataatagtattttttgagcta 10913953  T
Q  287 atataatttgaaagtgaatttaggagaagcta-----nnnnnnngcatcaagggtaagctggttgtggtattcgtaactttttcttttgttgtacatgta 381  Q
    ||||||||||||||||||||||||||||| ||            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10913952 atataatttgaaagtgaatttaggagaagttattttttttttttgcatcaagggtaagctggttgtggtattcgtaactttttcttttgttgtacatata 10913853  T
Q  382 ttcgtattttgtaacgttaaataccggtatttt 414  Q
    |||||||||| ||||||||||||  ||||||||    
T  10913852 ttcgtattttataacgttaaatattggtatttt 10913820  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 18601559 - 18601530
Alignment:
Q  251 ttgagctaatataaaaataatagtattttt 280  Q
    ||||||||||||||||||||||||||||||    
T  18601559 ttgagctaatataaaaataatagtattttt 18601530  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 20355435 - 20355370
Alignment:
Q  2 gttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagagag 67  Q
    ||||||||||||||| | | |||||| ||| || |||||| |||||||| | ||||||||||||||    
T  20355435 gttgaagagagagaaataggagagaagtcccactcttctcctgtttggttgtggtgagaaagagag 20355370  T

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Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 10365916 - 10366194
Alignment:
Q  1 ggttgaagagagagaagttgaagagaaatccaacacttctcttgt------ttggtaggggtgagaaagagag---------ttagaacatgtgggatcc 85  Q
    ||||||||||||||||||||||||||||||||||| |||||||||      || |||||| ||||||||||||         ||||||||||||||  ||    
T  10365916 ggttgaagagagagaagttgaagagaaatccaacatttctcttgtatagtattagtagggatgagaaagagagaagatagagttagaacatgtgggcccc 10366015  T
Q  86 tcactttttagagtcttcccacatgtgagaagaaagaggctagagatgctacttattgttgcttttccaattctaccctctcattgtgttataaaagaca 185  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  10366016 tcactttttagagtcttcccacatgtgagaagaaagagacgagagatgttacttattgttgcttttccaattctatcttctcattgtgttataaaagaca 10366115  T
Q  186 agaaaatggttttgcaggttatattattgttggtaatgttctttcgaatgttgttattttcattgttgagctaatataa 264  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10366116 agaaaatggttttgcaggttatactattgttggtaatgttctttcgaatgttgctattttcattgttgagctaatataa 10366194  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 279 - 406
Target Start/End: Original strand, 10366181 - 10366313
Alignment:
Q  279 ttgagctaatataatttgaaagtgaatttaggagaagctannnnnnngcatcaagggtaagctggttgtg-----gtattcgtaactttttcttttgttg 373  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||     |||||||||||||||||||||||||    
T  10366181 ttgagctaatataatttgaaagtgaatttaggagaagctatttttttgcatcaagggtaagctggttgtggtgtggtattcgtaactttttcttttgttg 10366280  T
Q  374 tacatgtattcgtattttgtaacgttaaatacc 406  Q
    |||||||||||||||||| ||||||||||||||    
T  10366281 tacatgtattcgtattttataacgttaaatacc 10366313  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 39937977 - 39937774
Alignment:
Q  7 agagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaa---------agagagttagaacatgtggg-atcctcactttttag 96  Q
    |||||||||  ||||||||||||||||||| |||||| ||| | || ||| ||||         ||||||||||||||||||||   || | |||||||     
T  39937977 agagagagagattgaagagaaatccaacacatctcttatttcgaagaggtaagaaagagagaagagagagttagaacatgtgggcccccaccctttttac 39937878  T
Q  97 agtcttcccacatgtgagaagaaagaggctagagatgctacttattgttgcttttccaattctaccctctcattgtgttataaaagacaagaaaatggtt 196  Q
    | ||||| |||||| | |||||||  ||  |||||||| ||||||| |||||||||||||||||||||| | |||||| ||||||||||| |||||| ||    
T  39937877 aatcttcacacatgagcgaagaaatgggagagagatgccacttattattgcttttccaattctaccctccctttgtgtcataaaagacaaaaaaatgatt 39937778  T
Q  197 ttgc 200  Q
    ||||    
T  39937777 ttgc 39937774  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 30724361 - 30724319
Alignment:
Q  22 agagaaatccaacacttctcttgtttggtaggggtgagaaaga 64  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  30724361 agagaagtccaacacttctcttgtttggttggggtgagaaaga 30724319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Complemental strand, 44827941 - 44827910
Alignment:
Q  287 atataatttgaaagtgaatttaggagaagcta 318  Q
    ||||||||||||||||||||||||||||||||    
T  44827941 atataatttgaaagtgaatttaggagaagcta 44827910  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28884845 - 28884911
Alignment:
Q  1 ggttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagagag 67  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  28884845 ggttgaagagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagag 28884911  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 41766035 - 41766100
Alignment:
Q  2 gttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagagag 67  Q
    ||||||||||||||| | | |||||||||| |||||||||||||||||  | ||||||||||||||    
T  41766035 gttgaagagagagaaataggagagaaatcctacacttctcttgtttggctgtggtgagaaagagag 41766100  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 34841545 - 34841485
Alignment:
Q  3 ttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaag 63  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||||| ||| ||||||    
T  34841545 ttgaagagagagaagttgaagagaaataccacatttctcttgtttggtagaggttagaaag 34841485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 43277879 - 43277819
Alignment:
Q  3 ttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaag 63  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||||| ||| ||||||    
T  43277879 ttgaagagagagaagttgaagagaaataccacatttctcttgtttggtagaggttagaaag 43277819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 11314873 - 11314938
Alignment:
Q  2 gttgaagagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagagag 67  Q
    ||||||||||||||| | | |||||| ||| ||||||||||||||||||   ||||||||||||||    
T  11314873 gttgaagagagagaaataggagagaagtcctacacttctcttgtttggttctggtgagaaagagag 11314938  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Original strand, 38369494 - 38369525
Alignment:
Q  287 atataatttgaaagtgaatttaggagaagcta 318  Q
    ||||||||||||||||||||||||||||||||    
T  38369494 atataatttgaaagtgaatttaggagaagcta 38369525  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 35877797 - 35877753
Alignment:
Q  21 aagagaaatccaacacttctcttgtttggtaggggtgagaaagag 65  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||    
T  35877797 aagagaagtccaacacttctcttgtttggttgtggtgagaaagag 35877753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Original strand, 8205530 - 8205561
Alignment:
Q  287 atataatttgaaagtgaatttaggagaagcta 318  Q
    ||||||||||||||||||||||||||||||||    
T  8205530 atataatttgaaagtgaatttaggagaagcta 8205561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 39888175 - 39888141
Alignment:
Q  249 tgttgagctaatataaaaataatagtatttttgag 283  Q
    ||||||||||||||||||||| |||||||||||||    
T  39888175 tgttgagctaatataaaaatattagtatttttgag 39888141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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