View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9639_low_33 (Length: 213)

Name: NF9639_low_33
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9639_low_33
NF9639_low_33
[»] scaffold0053 (2 HSPs)
scaffold0053 (89-213)||(30979-31103)
scaffold0053 (17-75)||(30891-30949)
[»] chr7 (9 HSPs)
chr7 (89-213)||(42080878-42081002)
chr7 (17-75)||(42081040-42081098)
chr7 (139-213)||(45406697-45406771)
chr7 (111-203)||(38788964-38789060)
chr7 (107-210)||(17474750-17474857)
chr7 (107-210)||(17510234-17510341)
chr7 (107-210)||(17542873-17542980)
chr7 (107-210)||(17578357-17578464)
chr7 (168-213)||(22528934-22528979)
[»] chr3 (4 HSPs)
chr3 (132-213)||(431961-432042)
chr3 (139-205)||(20935017-20935083)
chr3 (139-213)||(50331971-50332045)
chr3 (139-203)||(42400405-42400469)
[»] chr4 (7 HSPs)
chr4 (107-213)||(42757593-42757701)
chr4 (109-213)||(13228658-13228766)
chr4 (111-158)||(35308158-35308209)
chr4 (139-209)||(50158188-50158258)
chr4 (140-205)||(24183445-24183510)
chr4 (173-210)||(39976693-39976730)
chr4 (139-203)||(28475656-28475720)
[»] scaffold1315 (1 HSPs)
scaffold1315 (118-213)||(489-586)
[»] scaffold1293 (1 HSPs)
scaffold1293 (118-213)||(1485-1582)
[»] chr8 (2 HSPs)
chr8 (116-213)||(18953364-18953464)
chr8 (173-210)||(21587045-21587082)
[»] chr2 (5 HSPs)
chr2 (110-213)||(6466121-6466220)
chr2 (109-213)||(3395465-3395573)
chr2 (154-213)||(36727646-36727705)
chr2 (133-180)||(30637861-30637908)
chr2 (139-203)||(19040697-19040761)
[»] chr6 (3 HSPs)
chr6 (154-208)||(31737233-31737287)
chr6 (139-213)||(1599682-1599756)
chr6 (139-203)||(7428507-7428571)
[»] chr1 (5 HSPs)
chr1 (139-209)||(22636335-22636405)
chr1 (116-213)||(43387112-43387213)
chr1 (111-201)||(16851931-16852024)
chr1 (139-203)||(20306755-20306819)
chr1 (139-203)||(40946519-40946583)
[»] chr5 (1 HSPs)
chr5 (139-209)||(9012731-9012801)
[»] scaffold0051 (1 HSPs)
scaffold0051 (171-212)||(19051-19092)


Alignment Details
Target: scaffold0053 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 30979 - 31103
Alignment:
Q  89 gttgtggagggcggcgggtcttggtgatggatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatta 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30979 gttgtggagggcggcgggtcttggtgatggatcacagacacgaagagtctcttaatggagagatattaatttgtcagtcgtgagttaaaatttgacatta 31078  T
Q  189 gatgcaagagtagatgttgagaaac 213  Q
    |||||||||||||||||||||||||    
T  31079 gatgcaagagtagatgttgagaaac 31103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 30891 - 30949
Alignment:
Q  17 acatcaatgttgacttacatataagagccaacagtggtatcacatctcggttcaacatt 75  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  30891 acatcattgttgacttgcatataagagccaacggtggtatcacatctcggttcaacatt 30949  T

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Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 42081002 - 42080878
Alignment:
Q  89 gttgtggagggcggcgggtcttggtgatggatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatta 188  Q
    ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42081002 gttgtggagggcggcaggtcttggtgatggatcacatatacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatta 42080903  T
Q  189 gatgcaagagtagatgttgagaaac 213  Q
    |||||||||||||||||||||||||    
T  42080902 gatgcaagagtagatgttgagaaac 42080878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 42081098 - 42081040
Alignment:
Q  17 acatcaatgttgacttacatataagagccaacagtggtatcacatctcggttcaacatt 75  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  42081098 acatcaatgttgacttgcatataagacccaacggtggtatcacatctcggttcaacatt 42081040  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 45406697 - 45406771
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaac 213  Q
    ||||||||||| || ||||||||||| | |||||||||||||||||||| |||| ||||| ||||||||||||||    
T  45406697 cttaatggagaaatgttaatgtgtcaattgtgagttaaaatttgacatttgatgtaagaggagatgttgagaaac 45406771  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 38789060 - 38788964
Alignment:
Q  111 ggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 203  Q
    |||| ||||||||| ||||| |||||||    |||||||||||||| ||||||||| |   || ||||||||||| |||||  ||||||||||||||    
T  38789060 ggtggtggatcacaaacacggagagtctgacacttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagat 38788964  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 17474857 - 17474750
Alignment:
Q  107 tcttggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtaga 202  Q
    |||||||| | |||||||| ||| ||||||||    |||| ||||||||| |||||||||||    ||||||||| ||| |||||  ||| |||||||||    
T  17474857 tcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtaga 17474758  T
Q  203 tgttgaga 210  Q
    ||||||||    
T  17474757 tgttgaga 17474750  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 17510341 - 17510234
Alignment:
Q  107 tcttggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtaga 202  Q
    |||||||| | |||||||| ||| ||||||||    |||| ||||||||| |||||||||||    ||||||||| ||| |||||  ||| |||||||||    
T  17510341 tcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtaga 17510242  T
Q  203 tgttgaga 210  Q
    ||||||||    
T  17510241 tgttgaga 17510234  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 17542873 - 17542980
Alignment:
Q  107 tcttggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtaga 202  Q
    |||||||| | |||||||| ||| ||||||||    |||| ||||||||| |||||||||||    ||||||||| ||| |||||  ||| |||||||||    
T  17542873 tcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtaga 17542972  T
Q  203 tgttgaga 210  Q
    ||||||||    
T  17542973 tgttgaga 17542980  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 17578357 - 17578464
Alignment:
Q  107 tcttggtgatggatcacagacacgaagagtct----cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtaga 202  Q
    |||||||| | |||||||| ||| ||||||||    |||| ||||||||| |||||||||||    ||||||||| ||| |||||  ||| |||||||||    
T  17578357 tcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtaga 17578456  T
Q  203 tgttgaga 210  Q
    ||||||||    
T  17578457 tgttgaga 17578464  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 22528934 - 22528979
Alignment:
Q  168 gtgagttaaaatttgacattagatgcaagagtagatgttgagaaac 213  Q
    |||||||||||||| |||||  ||||||||||| ||||||||||||    
T  22528934 gtgagttaaaattttacattgtatgcaagagtaaatgttgagaaac 22528979  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 431961 - 432042
Alignment:
Q  132 agagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaac 213  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||| ||||||||||||    
T  431961 agagtctcttaatggagagatattaatgtgtcaattgtgagttaaaattcgacattggatgcaagagtatatgttgagaaac 432042  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 20935083 - 20935017
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgt 205  Q
    |||||||||||||| ||||||||||||  |||||||||||||| | |||  |||||| |||||||||    
T  20935083 cttaatggagagatgttaatgtgtcaggtgtgagttaaaattttatattgtatgcaatagtagatgt 20935017  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 50332045 - 50331971
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaac 213  Q
    |||||| ||||||| |||||||||||   ||||||||||||   |||||  |||||| |||||||||||||||||    
T  50332045 cttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaac 50331971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 42400469 - 42400405
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 203  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||    
T  42400469 cttaatggagagatgttaatgtgtcacgtgtgagttaaaattttatattgtatgcaatagtagat 42400405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 42757701 - 42757593
Alignment:
Q  107 tcttggtgatggatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatt--agatgcaagagtagatg 204  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||| | |||||| ||| ||| |||||  | |||||||||||||||    
T  42757701 tcttggtggtggatcacagacacggagagtctcttaatagagagatgttaatgtgtcaattgtgagtaaaagtttaacattggatatgcaagagtagatg 42757602  T
Q  205 ttgagaaac 213  Q
    |||| ||||    
T  42757601 ttgaaaaac 42757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 13228658 - 13228766
Alignment:
Q  109 ttggtgatggatcacagacacgaagagtctc----ttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatg 204  Q
    |||||| |||||| ||||||| || ||||||    ||||||||||||| |||||||||||   ||||||||||||   |||||  |||||| ||||||||    
T  13228658 ttggtggtggatcgcagacacaaaaagtctcatacttaatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatg 13228757  T
Q  205 ttgagaaac 213  Q
    |||||||||    
T  13228758 ttgagaaac 13228766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 35308158 - 35308209
Alignment:
Q  111 ggtgatggatcacagacacgaagagtct----cttaatggagagatattaat 158  Q
    |||| |||||||||||||||||||||||    ||||||||||||||||||||    
T  35308158 ggtggtggatcacagacacgaagagtctgacacttaatggagagatattaat 35308209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 50158188 - 50158258
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgag 209  Q
    |||||||||||||| |||||||||||    ||||||||| ||| |||||  ||||||||||| ||||||||    
T  50158188 cttaatggagagatgttaatgtgtcaagtatgagttaaagtttcacattttatgcaagagtatatgttgag 50158258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 24183510 - 24183445
Alignment:
Q  140 ttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgt 205  Q
    ||||||||||||| ||||||||| |   || ||||||||||| |||||  ||||||||||||||||    
T  24183510 ttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagatgt 24183445  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 39976693 - 39976730
Alignment:
Q  173 ttaaaatttgacattagatgcaagagtagatgttgaga 210  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  39976693 ttaaattttcacattagatgcaagagtagatgttgaga 39976730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 28475720 - 28475656
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 203  Q
    |||||||||||||| ||||||||| |   || ||||||||||| |||||  ||||||||||||||    
T  28475720 cttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagat 28475656  T

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Target: scaffold1315 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 489 - 586
Alignment:
Q  118 gatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatt--agatgcaagagtagatgttgagaaac 213  Q
    ||||| ||||||| ||||||||||||| ||||||| ||||||||||||| || ||| ||| ||  |||||  | ||||||||||||||||||||||||    
T  489 gatcatagacacggagagtctcttaatagagagatgttaatgtgtcagttgtaagtaaaagttcaacattggatatgcaagagtagatgttgagaaac 586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 1582 - 1485
Alignment:
Q  118 gatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacatt--agatgcaagagtagatgttgagaaac 213  Q
    ||||| ||||||| ||||||||||||| ||||||| ||||||||||||| || ||| ||| ||  |||||  | ||||||||||||||||||||||||    
T  1582 gatcatagacacggagagtctcttaatagagagatgttaatgtgtcagttgtaagtaaaagttcaacattggatatgcaagagtagatgttgagaaac 1485  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 18953464 - 18953364
Alignment:
Q  116 tggatcacagacacgaagagtctcttaatggagaga---tattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaa 212  Q
    ||||||||||||||| ||| ||| |||||||||| |   | |||||||||||   |||| ||||||||||||||| |||||||||||||||||||| |||    
T  18953464 tggatcacagacacggagattctattaatggagaaaggttgttaatgtgtcaactgtgaattaaaatttgacattggatgcaagagtagatgttgaaaaa 18953365  T
Q  213 c 213  Q
    |    
T  18953364 c 18953364  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 21587082 - 21587045
Alignment:
Q  173 ttaaaatttgacattagatgcaagagtagatgttgaga 210  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  21587082 ttaaattttcacattagatgcaagagtagatgttgaga 21587045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 6466121 - 6466220
Alignment:
Q  110 tggtgatggatcacagacacgaagagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgag 209  Q
    ||||| ||||||||||||||  |||||||||||||||||| || |||| ||||     |||| ||||||||||||||| |||||||||||| |||||||     
T  6466121 tggtggtggatcacagacacagagagtctcttaatggagaaatgttaacgtgtt----gtgaattaaaatttgacattggatgcaagagtaaatgttgaa 6466216  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 3395573 - 3395465
Alignment:
Q  109 ttggtgatggatcacagacacgaagagtctc----ttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatg 204  Q
    |||||| |||||| ||||||| |||||||||    ||||||||||||| ||||||||||||  ||||||||||||   || ||  |||||| ||||||||    
T  3395573 ttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatagtagatg 3395474  T
Q  205 ttgagaaac 213  Q
    |||||||||    
T  3395473 ttgagaaac 3395465  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 36727705 - 36727646
Alignment:
Q  154 ttaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaac 213  Q
    ||||||||||| | |||| ||||||||| ||||||||||||| |||||||||| ||||||    
T  36727705 ttaatgtgtcaattgtgacttaaaatttcacattagatgcaaaagtagatgttaagaaac 36727646  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 30637908 - 30637861
Alignment:
Q  133 gagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatt 180  Q
    ||||||||||||||||  |||||||||||||| | |||||||||||||    
T  30637908 gagtctcttaatggagttatattaatgtgtcaattgtgagttaaaatt 30637861  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 19040697 - 19040761
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 203  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||    
T  19040697 cttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 19040761  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 31737287 - 31737233
Alignment:
Q  154 ttaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttga 208  Q
    ||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||    
T  31737287 ttaatgtgtcaattgtgagttaaaatttcacattggatgcaagagtagatgttga 31737233  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 1599682 - 1599756
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaac 213  Q
    |||||| ||||||| |||||||||||   ||||||||||||   |||||  |||||| |||||||||||||||||    
T  1599682 cttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaac 1599756  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 7428571 - 7428507
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 203  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||    
T  7428571 cttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 7428507  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 22636405 - 22636335
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgag 209  Q
    |||||||||||||| ||||| | |||   ||||||||||||||||| ||  ||||||||||||||||||||    
T  22636405 cttaatggagagatgttaatttttcaagtgtgagttaaaatttgactttgaatgcaagagtagatgttgag 22636335  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 43387213 - 43387112
Alignment:
Q  116 tggatcacagacacgaagagtctc----ttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaa 211  Q
    |||||| |||||||| ||||||||    ||||  ||||||| |||||||||||   |||||||||||||  |||||  |||||| |||||||||||||||    
T  43387213 tggatcgcagacacggagagtctcgtacttaacagagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaa 43387114  T
Q  212 ac 213  Q
    ||    
T  43387113 ac 43387112  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 16851931 - 16852024
Alignment:
Q  111 ggtgatggatcacagacacgaagagtctc---ttaatggagagatattaatgtg-tcagtcgtgagttaaaatttgacattagatgcaagagtag 201  Q
    |||| ||||||||  |||||||||||||    ||||||||||||| |||||||| ||||| || ||||||||||| |||||  ||||||||||||    
T  16851931 ggtggtggatcacgaacacgaagagtctgactttaatggagagatgttaatgtgttcagt-gtaagttaaaatttcacattgtatgcaagagtag 16852024  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 20306819 - 20306755
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 203  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||    
T  20306819 cttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 20306755  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 40946519 - 40946583
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagat 203  Q
    |||||||||||||| |||||||||||   |||||||||||||| | |||  |||||| |||||||    
T  40946519 cttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 40946583  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 9012801 - 9012731
Alignment:
Q  139 cttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgag 209  Q
    ||||||||||| ||||||||||||||   || ||||||||||| ||| |  || |||||||||||||||||    
T  9012801 cttaatggagacatattaatgtgtcaagtgttagttaaaatttcacaatgaattcaagagtagatgttgag 9012731  T

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Target: scaffold0051 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 19051 - 19092
Alignment:
Q  171 agttaaaatttgacattagatgcaagagtagatgttgagaaa 212  Q
    ||||||| ||||||||||||||| |||||||||| |||||||    
T  19051 agttaaattttgacattagatgctagagtagatggtgagaaa 19092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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