View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9639_low_4 (Length: 431)
Name: NF9639_low_4
Description: NF9639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9639_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 11412967 - 11413249
Alignment:
| Q |
20 |
tgaaaactccataaaataaaatgacccatttttcgattttgctcctctgatacaaaaactactaactgtgacataatatgatttttattccatgtgactg |
119 |
Q |
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| T |
11412967 |
tgaaaactccataaaacaaaatgacccatttttcgattttgttcctctgatacaaaaactactaactctgacataatatgatttttattccatgtgactg |
11413066 |
T |
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| Q |
120 |
atgataagtggaaaaactatctaatgaattttatcaagaatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatatt |
219 |
Q |
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| T |
11413067 |
atgataagtggaaaaactatctaatgaattttaccaagaatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatatt |
11413166 |
T |
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| Q |
220 |
atatttaacctattttttatttactatgcttattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagtatgat |
302 |
Q |
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| T |
11413167 |
atatttaacctattttttatttactatgcttattgtgcttatcattgacccgtgtgaagcacgggagcacgatttagtatgat |
11413249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 11413327 - 11413383
Alignment:
| Q |
356 |
aatttggtgtgtattaagatacaatcccacctcttatattagactattacttttccc |
412 |
Q |
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| T |
11413327 |
aatttggtgtgtattaagatacaatcctacctcttatattagactattacttttccc |
11413383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 34875102 - 34875169
Alignment:
| Q |
158 |
aatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatattt |
225 |
Q |
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| T |
34875102 |
aatgttcgttaattaatgttattattactcatgtaatgttgtaatgaaatttcaattatatcatattt |
34875169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 297
Target Start/End: Original strand, 20807390 - 20807538
Alignment:
| Q |
156 |
agaatgttcgttaattaatgttattatta---cttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgct--- |
249 |
Q |
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| T |
20807390 |
agaatgttcgttaattaatgttattattattactcatgtgatgtcgtaatggagtttcaatagtattatatttaatgtgcttttaatttattatgctcat |
20807489 |
T |
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| Q |
250 |
-tattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagt |
297 |
Q |
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| T |
20807490 |
atattgtgctcatcattttcccgtgcgaagcacggttgcacaatctagt |
20807538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 15029151 - 15029102
Alignment:
| Q |
249 |
ttattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagta |
298 |
Q |
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| T |
15029151 |
ttattgtgttcaccattgacccgtgcgaagcacgggagtgcgatctagta |
15029102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 15598488 - 15598402
Alignment:
| Q |
159 |
atgttcgttaattaatgttatt---attacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttattta |
242 |
Q |
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| T |
15598488 |
atgttcgttaattaatgttattattattacttatgtgatgtcgtaatgaagtctcaaatgcattatatttaacatgtttttaattta |
15598402 |
T |
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