View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9640_1 (Length: 934)

Name: NF9640_1
Description: NF9640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9640_1
NF9640_1
[»] chr7 (5 HSPs)
chr7 (607-934)||(47116796-47117119)
chr7 (92-327)||(47121907-47122142)
chr7 (1-36)||(47122198-47122233)
chr7 (529-575)||(27100708-27100753)
chr7 (529-575)||(27177550-27177595)
[»] chr1 (3 HSPs)
chr1 (328-585)||(21383434-21383694)
chr1 (328-586)||(24907947-24908208)
chr1 (328-405)||(24908209-24908286)
[»] chr3 (2 HSPs)
chr3 (327-505)||(37501889-37502071)
chr3 (328-585)||(3443789-3444053)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-157; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 607 - 934
Target Start/End: Original strand, 47116796 - 47117119
Alignment:
Q  607 cttgttatttcatttccttatgatatctcnnnnnnnctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatatt 706  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47116796 cttgttatttcatttccttatgatatctctttttttctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatatt 47116895  T
Q  707 caataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaacg 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47116896 caataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaacg 47116995  T
Q  807 tatcaatgactcgatcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgg 906  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47116996 tatcaatgac----tcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgg 47117091  T
Q  907 gaacgccaacatcaccatcttcgccggt 934  Q
    |||||||||||||||| ||||| |||||    
T  47117092 gaacgccaacatcaccgtcttcaccggt 47117119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 92 - 327
Target Start/End: Complemental strand, 47122142 - 47121907
Alignment:
Q  92 cgggcttacatgatcacttgtggtttgattttattcatggtggattttgtgtcatacccatttgtcagagtattaaacttacctgtttgataagcgagca 191  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  47122142 cgggcttacatgatcacttgtggtttgattttattcatggtcgattttgtgtcatacccatttgtctcagtattaaacttacctgtttgataagcgagca 47122043  T
Q  192 tccaaggttaccccttcgccaagattagcaatctgtaaggaaaatgtggagaaaaattaggacatttgatactaaatataaatattttgtcagactcaaa 291  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47122042 tccaaagttaccccttcgccaagattagcaatctgtaaggaaaatgtggagaaaaattaggacatttgatactaaatataaatattttgtcagactcaaa 47121943  T
Q  292 atattgaagcactatttctataccaatatatttaat 327  Q
    ||||||||||||||||||||||||||||||||||||    
T  47121942 atattgaagcactatttctataccaatatatttaat 47121907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 47122233 - 47122198
Alignment:
Q  1 aagtcgacaaacctctctttgttgcagctctttcct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  47122233 aagtcgacaaacctctctttgttgcagctctttcct 47122198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 529 - 575
Target Start/End: Original strand, 27100708 - 27100753
Alignment:
Q  529 agtccaaatcagtgttttttccaatggtataaagattaaagtgtaaa 575  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||    
T  27100708 agtccaaagaagtgttttttccaatgg-ataaagattaaagtgtaaa 27100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 529 - 575
Target Start/End: Complemental strand, 27177595 - 27177550
Alignment:
Q  529 agtccaaatcagtgttttttccaatggtataaagattaaagtgtaaa 575  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||    
T  27177595 agtccaaagaagtgttttttccaatgg-ataaagattaaagtgtaaa 27177550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 328 - 585
Target Start/End: Complemental strand, 21383694 - 21383434
Alignment:
Q  328 gagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctact--tacaatttgctctattagactttgaatattagtt 425  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||||  |||||| ||||||  |||||||||||||||||| ||||||||| |||||    
T  21383694 gagcggtgctatatagcacgatcctctttccccatgaaattgcacgactgccataaaatctactcgtacaatttgctctattaggctttgaatactagtt 21383595  T
Q  426 tatcattttaaaaatacaactataat-taaataccaaaacnnnnnnngtaagcatagtcaaaataatgttgctataatcacactgtcacagttggtatgg 524  Q
    |||| ||||||||||||||||||||  |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  21383594 tatccttttaaaaatacaactataaactaaataccaaaacaaaaaaagtaagcatagtcaaaataatgttgctataatcacactgtcacagttggtaccg 21383495  T
Q  525 ttacagtccaaatcagtgttttttccaatggtataaagattaaagtgtaaactatcaaaga 585  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  21383494 ctacagtccaaatcagtgttttttccaatggaataaagattaaagtgtaaaccatcaaaga 21383434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 328 - 586
Target Start/End: Complemental strand, 24908208 - 24907947
Alignment:
Q  328 gagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctacttacaatttgctctattagactttgaatattagttta 427  Q
    |||||||||||||||||||   ||||||||| || |||  ||||||||| ||||||| |||||  ||||||||||||||||| ||||||||| |||||||    
T  24908208 gagcggtgctatatagcacggcgctctttccccacgaatctgcacgactagcataaaatctacacacaatttgctctattaggctttgaatactagttta 24908109  T
Q  428 tcattttaaaaatacaactataat----taaataccaaaacnnnnnnngtaagcatagtcaaaataatgttgctataatcacactgtcacagttggtatg 523  Q
    || ||||| |||||||||||  ||    |||||||||||||       |||||||||||  |||||| |||||||||||  ||| |||| ||||||||      
T  24908108 tccttttataaatacaactactataaactaaataccaaaacaaaaaaagtaagcatagtttaaataacgttgctataat--cacggtcatagttggtacc 24908011  T
Q  524 gttacagtccaaatcag-tgttttttccaatggtataaagattaaagtgtaaactatcaaagac 586  Q
    | || | |  ||||||| | |||||| |||| | |||||||| ||||||||| |||||||||||    
T  24908010 gctagaattaaaatcagttttttttttcaatagaataaagatcaaagtgtaatctatcaaagac 24907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 24908286 - 24908209
Alignment:
Q  328 gagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctacttacaatttgctcta 405  Q
    ||||||||||||||||||| | ||||||||| || |||  ||||||||| ||||||| |||||  |||||||||||||    
T  24908286 gagcggtgctatatagcacgacgctctttccccacgaatctgcacgactagcataaaatctacacacaatttgctcta 24908209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 327 - 505
Target Start/End: Complemental strand, 37502071 - 37501889
Alignment:
Q  327 tgagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctacttacaatttgctctattagactttgaatattagttt 426  Q
    |||||||||||||||||||| | ||||||||| || |||  ||||||||| ||| ||| |||||  ||||||| ||||||||| ||||||||| ||||||    
T  37502071 tgagcggtgctatatagcacgacgctctttccccacgaatctgcacgactagcaaaaaatctacacacaattttctctattaggctttgaatactagttt 37501972  T
Q  427 atcattttaaaaatacaactataat----taaataccaaaacnnnnnnngtaagcatagtcaaaataatgttgctataatcac 505  Q
    ||| ||||| |||||||||||  ||    |||||||||||||       |||||||||||  |||||| ||||||||||||||    
T  37501971 atccttttataaatacaactactataaactaaataccaaaacaaaaaaagtaagcatagtttaaataacgttgctataatcac 37501889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 328 - 585
Target Start/End: Complemental strand, 3444053 - 3443789
Alignment:
Q  328 gagcggtgctatatagcacaatgctctttcctcatgaaattgcacgacttgcataaagtctacttacaatttgctctattagactttgaatattagttta 427  Q
    ||||||||||||||||||| | ||||||||| || |||  ||||||||| ||||||| ||||   | ||||||||||||||| ||||||||| || ||||    
T  3444053 gagcggtgctatatagcacgacgctctttccccacgaatctgcacgactagcataaaatctatacataatttgctctattaggctttgaatactaattta 3443954  T
Q  428 tcattttaaaaatacaactataat----taaataccaaaacnnnnnnngtaagcatagtcaaaataatgttgctataatcacactgtcacagttggtatg 523  Q
    || ||||| |||||||||||  ||    |||||||||||||       |||||||||||  |||||| |||||||||||||||  |||| ||||||||      
T  3443953 tccttttataaatacaactactataaactaaataccaaaacaaaaaaagtaagcatagtttaaataacgttgctataatcaca--gtcatagttggtacc 3443856  T
Q  524 gttacagtccaaatcag-----tgttttttccaatggtataaagattaaagtgtaaactatcaaaga 585  Q
    | || |||  |||||||     | |||||| |||| | |||||||| ||||||||| ||||||||||    
T  3443855 gctagagttaaaatcagttttttttttttttcaatagaataaagatcaaagtgtaatctatcaaaga 3443789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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