View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9640_4 (Length: 437)
Name: NF9640_4
Description: NF9640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9640_4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 226 - 437
Target Start/End: Original strand, 47116614 - 47116825
Alignment:
| Q |
226 |
gtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaagaaaatttccacgtcataca |
325 |
Q |
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| T |
47116614 |
gtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaagaaaagttccacgtcataca |
47116713 |
T |
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| Q |
326 |
tctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatacccttgttatttcatttcct |
425 |
Q |
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| T |
47116714 |
tctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatacccttgttatttcatttcct |
47116813 |
T |
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| Q |
426 |
tatgatatctct |
437 |
Q |
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| T |
47116814 |
tatgatatctct |
47116825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 92 - 234
Target Start/End: Complemental strand, 47122142 - 47122000
Alignment:
| Q |
92 |
cgggcttacatgatcacttgtggtttgattttattcatggtggattttgtgtcatacccatttgtcagagtattaaacttacctgtttgataagcgagca |
191 |
Q |
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| T |
47122142 |
cgggcttacatgatcacttgtggtttgattttattcatggtcgattttgtgtcatacccatttgtctcagtattaaacttacctgtttgataagcgagca |
47122043 |
T |
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| Q |
192 |
tccaaagttaccccttcgccaagattagcaatctgtaaggaaa |
234 |
Q |
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| T |
47122042 |
tccaaagttaccccttcgccaagattagcaatctgtaaggaaa |
47122000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 47122233 - 47122198
Alignment:
| Q |
1 |
aagtcgacaaacctctctttgttgcagctctttcct |
36 |
Q |
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| T |
47122233 |
aagtcgacaaacctctctttgttgcagctctttcct |
47122198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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