View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9640_5 (Length: 389)

Name: NF9640_5
Description: NF9640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9640_5
NF9640_5
[»] chr7 (5 HSPs)
chr7 (27-377)||(43009687-43010041)
chr7 (27-105)||(43009284-43009362)
chr7 (36-108)||(17198925-17198997)
chr7 (36-105)||(6056766-6056835)
chr7 (36-93)||(46867989-46868046)
[»] chr8 (4 HSPs)
chr8 (223-377)||(18217544-18217702)
chr8 (223-364)||(18298252-18298392)
chr8 (106-173)||(18217470-18217537)
chr8 (106-139)||(18297803-18297836)
[»] chr5 (1 HSPs)
chr5 (27-105)||(15459235-15459313)
[»] chr1 (2 HSPs)
chr1 (36-111)||(43870336-43870411)
chr1 (36-104)||(43868615-43868683)
[»] chr4 (3 HSPs)
chr4 (36-106)||(50131161-50131231)
chr4 (36-89)||(50133120-50133173)
chr4 (27-95)||(9590311-9590379)
[»] chr3 (6 HSPs)
chr3 (36-105)||(5127469-5127538)
chr3 (36-105)||(54094185-54094254)
chr3 (36-105)||(5125801-5125870)
chr3 (27-94)||(5133007-5133074)
chr3 (38-106)||(41625375-41625443)
chr3 (36-93)||(5134724-5134781)
[»] chr2 (5 HSPs)
chr2 (36-105)||(59837-59906)
chr2 (36-107)||(13999805-13999876)
chr2 (36-105)||(25757381-25757450)
chr2 (36-105)||(14001514-14001583)
chr2 (36-105)||(4417012-4417081)
[»] chr6 (1 HSPs)
chr6 (36-106)||(25170296-25170366)
[»] scaffold0204 (1 HSPs)
scaffold0204 (36-105)||(28341-28410)
[»] scaffold0092 (1 HSPs)
scaffold0092 (36-105)||(34599-34668)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 27 - 377
Target Start/End: Original strand, 43009687 - 43010041
Alignment:
Q  27 caaaatagccatttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactctttaaaccacttgcatcttaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43009687 caaaatagccatttcgataaattgagggacgtttttatctgattcgtgcaaattcaaggacaaatttaactattcactctttaaaccacttgcatcttaa 43009786  T
Q  127 tatcaacttctagaaatagaaaattatttgaacatgatttcaatccaggcattatggaaaaatgctcattccttaaacc----nnnnnnnnnnnnnnnnn 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                         
T  43009787 tatcaacttctagaaatagaaaattatttgaacatgatttcaatccaggcattatggaaaaatgctcattccttaaaccaaaaaaaaaaaaaaaaaaaaa 43009886  T
Q  223 gttcattacaacctagtagaatgtcagcttgcgattttagttgtttttgtggtccctttgttttgggtaaattctttgtcctttgttctactctccaatc 322  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43009887 gttcattacaacctagtagaatgtcagcttgtgattttagttgtttttgtggtccctttgttttgggtaaattctttgtcctttgttgtactctccaatc 43009986  T
Q  323 tttatctggaagtcccagctttcattgccactacttttattttcaaataggtctg 377  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43009987 tttatctggaagtcccagctttcattgctactacttttattttcaaataggtctg 43010041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 43009362 - 43009284
Alignment:
Q  27 caaaatagccatttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    ||||||||| |||||||||||||||||||||||||| |||||||  | |||||||||||| |||||| |||||||||||    
T  43009362 caaaatagctatttcgataaattgagggacgtttttgtctgattcatacaaattcaaggataaatttaactattcactc 43009284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 17198997 - 17198925
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactcttt 108  Q
    ||||||||||||||| ||||||||||| |  |||| ||||||||||| |||| || |||| ||||||||||||    
T  17198997 catttcgataaattgggggacgtttttgttcgattcgtgcaaattcagggacgaaattgaatattcactcttt 17198925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 6056835 - 6056766
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    |||||||||||||||  |||||||||| || |||| ||||||||||| |||| ||||||  |||||||||    
T  6056835 catttcgataaattggaggacgtttttgtccgattcgtgcaaattcagggacgaatttgggtattcactc 6056766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 46867989 - 46868046
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaattt 93  Q
    |||||||||||||||  |||||||||| || |||| ||||||||||| ||||||||||    
T  46867989 catttcgataaattggaggacgtttttgtccgattcgtgcaaattcagggacaaattt 46868046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 223 - 377
Target Start/End: Original strand, 18217544 - 18217702
Alignment:
Q  223 gttcattacaacctagtagaatgtcagcttgcgattttagttgtttttgtggtccctttgttttgggtaaatt-ctttgtcctttgttcta---ctctcc 318  Q
    ||||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||| | || |||||||||||||| |    ||||||    
T  18217544 gttcattacgacctagtagaatgtcggcttctgattttagttgtttttgtggtccctttgttttgggttattttctttgtcctttgttgttgtcctctcc 18217643  T
Q  319 aatctttatctggaagtcccagctttcattgccactacttttattttcaaataggtctg 377  Q
    |||||||||||| | |||||||||||||||||  || ||||||||||||| ||||||||    
T  18217644 aatctttatctgtaggtcccagctttcattgctgctccttttattttcaagtaggtctg 18217702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 223 - 364
Target Start/End: Original strand, 18298252 - 18298392
Alignment:
Q  223 gttcattacaacctagtagaatgtcagcttgcgattttagttgtttttgtggtccctttgttttgggtaaatt-ctttgtcctttgttctactctccaat 321  Q
    ||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||||||||| | || |||||||||||||| | ||||| |||    
T  18298252 gttcattacaacctagtagaatgt--gcttctgattttagttgtttttgtggtccctttgttttgggttattttctttgtcctttgttgtcctctctaat 18298349  T
Q  322 ctttatctggaagtcccagctttcattgccactacttttattt 364  Q
    ||||||||| | |||||| ||||||||||  ||||||||||||    
T  18298350 ctttatctgtaggtcccacctttcattgctgctacttttattt 18298392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 18217470 - 18217537
Alignment:
Q  106 tttaaaccacttgcatcttaatatcaacttctagaaatagaaaattatttgaacatgatttcaatcca 173  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||    
T  18217470 tttaaaccacttgcatcttaatatcaacttctagaattagcaaattattagatcatgatttcaatcca 18217537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 18297803 - 18297836
Alignment:
Q  106 tttaaaccacttgcatcttaatatcaacttctag 139  Q
    |||||||||| |||||||||||||||||||||||    
T  18297803 tttaaaccacctgcatcttaatatcaacttctag 18297836  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 15459235 - 15459313
Alignment:
Q  27 caaaatagccatttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    |||||||||||||||||||||||| |||||| |||| || |||   ||||||||||||||| |||||||||||||||||    
T  15459235 caaaatagccatttcgataaattgggggacgattttgtccgatccttgcaaattcaaggacgaatttgactattcactc 15459313  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 43870336 - 43870411
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactctttaaa 111  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||| ||| ||||||  ||||||||| |||||    
T  43870336 catttcgataaattgaaggacgtttttatccgattcgtgcaaattcaatgacgaatttgggtattcactccttaaa 43870411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 43868683 - 43868615
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcact 104  Q
    ||||||||||||||   ||||||||||||| |||| ||||||||||| |||| ||||||  ||||||||    
T  43868683 catttcgataaattagaggacgtttttatccgattcgtgcaaattcagggactaatttgggtattcact 43868615  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 50131231 - 50131161
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactct 106  Q
    ||||||||||||||| ||||||||||| || |||| ||||||||||| |||||||||||  ||||||||||    
T  50131231 catttcgataaattgggggacgtttttgtccgattcgtgcaaattcagggacaaatttgggtattcactct 50131161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 50133120 - 50133173
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaa 89  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||||||||||||||||    
T  50133120 catttcgataaattgggggacgtttttgtctaattcgtgcaaattcaaggacaa 50133173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 9590379 - 9590311
Alignment:
Q  27 caaaatagccatttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttga 95  Q
    ||||||||||||||||||||||||  |||  ||||| || |||| ||||||||||||| || |||||||    
T  9590379 caaaatagccatttcgataaattggaggatatttttgtccgattcgtgcaaattcaagaacgaatttga 9590311  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 5127469 - 5127538
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    |||||||||||||||  |||||||||| || ||||||||||||||||||||| ||||||  |||||||||    
T  5127469 catttcgataaattggaggacgtttttgtccgatttgtgcaaattcaaggacgaatttgggtattcactc 5127538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 54094185 - 54094254
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    ||||||||||||||||  || |||||| |||||||||||||||||||||||  ||||||| |||||||||    
T  54094185 catttcgataaattgaaagatgtttttgtctgatttgtgcaaattcaaggatgaatttgagtattcactc 54094254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 5125870 - 5125801
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    |||||||||||||||  |||||||||| || |||| |||||||||||||||| ||||||  |||||||||    
T  5125870 catttcgataaattggaggacgtttttgtccgattcgtgcaaattcaaggactaatttgggtattcactc 5125801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 5133074 - 5133007
Alignment:
Q  27 caaaatagccatttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttg 94  Q
    |||||||  |||||||||||||||  |||||||||| || |||| |||||||||||||||| ||||||    
T  5133074 caaaatatgcatttcgataaattggaggacgtttttgtccgattcgtgcaaattcaaggactaatttg 5133007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 41625375 - 41625443
Alignment:
Q  38 tttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactct 106  Q
    ||||||||||||| ||||| ||||| || |||| ||||||||||| |||| ||||||  ||||||||||    
T  41625375 tttcgataaattgggggacatttttgtccgattcgtgcaaattcagggacgaatttggatattcactct 41625443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 5134724 - 5134781
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaattt 93  Q
    |||||||||||||||  ||| |||||| || |||| |||||||||||||||| |||||    
T  5134724 catttcgataaattggaggatgtttttgtccgattcgtgcaaattcaaggacgaattt 5134781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 59906 - 59837
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    ||||||||| |||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||    
T  59906 catttcgatgaattgagggatgtttttgtctgattcgtgcaaattcagggacaaatttgggtattcactc 59837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 13999876 - 13999805
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactctt 107  Q
    |||||||||||||| |  ||| ||||||||||||| |||||||||||||||| ||||||  |||||||||||    
T  13999876 catttcgataaattaaaagacatttttatctgattcgtgcaaattcaaggacgaatttgtatattcactctt 13999805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 25757450 - 25757381
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    ||||||||||||||| ||||| ||||| ||||||| ||||||||||| |||| ||||||  |||||||||    
T  25757450 catttcgataaattgggggacatttttgtctgattcgtgcaaattcagggacgaatttgggtattcactc 25757381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 14001514 - 14001583
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    ||||||||||||||| ||||||||||| |||||||  |||||||||| ||||  |||||  |||||||||    
T  14001514 catttcgataaattgggggacgtttttgtctgattcatgcaaattcatggacggatttgggtattcactc 14001583  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 4417012 - 4417081
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    ||||||||| ||||| ||||||||||| |  |||| ||| ||||||| |||||||||||  |||||||||    
T  4417012 catttcgatgaattgggggacgtttttgttcgattcgtgaaaattcagggacaaatttgggtattcactc 4417081  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 25170366 - 25170296
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactct 106  Q
    ||||||||| |||| |||||||||||| |  |||| ||||||||||| |||| ||||||  ||||||||||    
T  25170366 catttcgatgaattaagggacgtttttgttcgattcgtgcaaattcagggacgaatttgggtattcactct 25170296  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 28410 - 28341
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    ||||||||| ||||| ||||||||||| |  |||| ||| |||| ||||||| ||||||| |||||||||    
T  28410 catttcgattaattgggggacgtttttgttcgattcgtgaaaatccaaggacgaatttgagtattcactc 28341  T

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Target: scaffold0092 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 34668 - 34599
Alignment:
Q  36 catttcgataaattgagggacgtttttatctgatttgtgcaaattcaaggacaaatttgactattcactc 105  Q
    |||||||| ||||| ||||||||||||  | |||| |||||||| ||||||| ||||||  |||||||||    
T  34668 catttcgacaaattaagggacgtttttgaccgattcgtgcaaatccaaggacgaatttggttattcactc 34599  T

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