View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9640_6 (Length: 351)
Name: NF9640_6
Description: NF9640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9640_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 351
Target Start/End: Complemental strand, 28449423 - 28449096
Alignment:
| Q |
22 |
attgatattattggaactgacaatacataacgaagaattcaaatgataaactagaaagttgatttggatgataatatgaggtcgtgaaagagaggattgt |
121 |
Q |
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| T |
28449423 |
attgatattattggaactgacaatacataacgaggaattcaaatgataaactagaaagttgatttggatgataatatgaggtcgtgaaagagaggattgt |
28449324 |
T |
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| Q |
122 |
catgacttttgactgaagatttacctcattgtactattttgcatttgtataggggattgagaacttcatctttaagggtcaaattggtaaaatttatttt |
221 |
Q |
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| T |
28449323 |
catgacttttgactgaagatttacctcattgtactattttgcatttgtataggggattgagaacttcatctttaa-ggtcaaattggtaaaatttatttt |
28449225 |
T |
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| Q |
222 |
caaatgacaaatataatnnnnnnncaattacacttttcaaggaccaaattatatttttattaaggttcataattgatgtaagtctattacattaataatt |
321 |
Q |
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| T |
28449224 |
caaaagacaaatataataaaaaaacaattacaattttcaaggaccaaattata-ttttattaaggttcataattgatgtaagtctattacattaataatt |
28449126 |
T |
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| Q |
322 |
tattttagtctcactaaattaatctttgtt |
351 |
Q |
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| T |
28449125 |
tattttagtctcactaaattaatctttgtt |
28449096 |
T |
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