View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9640_low_1 (Length: 331)
Name: NF9640_low_1
Description: NF9640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9640_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 29014234 - 29014539
Alignment:
| Q |
18 |
aacagcaccagctgtgcaaatgctccagcacctgctcctattgcgaaacctggaggtcccctctgcctaggagttgttcctgatgatgatggcatattaa |
117 |
Q |
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| T |
29014234 |
aacagcaccagctgcacaaatgctccagcacctgctcctattgcgaaacctggaggtcccctctgcctaggagctgttcctgatgatgatggcatattaa |
29014333 |
T |
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| Q |
118 |
aataactcggtgtcaatccatcactacttcgatgaaaattgggaacataaccaaaatttgaaggtggaggtggtggtggaggagttcttggtccagaagc |
217 |
Q |
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| T |
29014334 |
aataactcggtgtcaatccatcattacttcgatgaaaattgggaacataaccaacatttgaaggtggaggtggtggtggaggagttcttggtccagaagc |
29014433 |
T |
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| Q |
218 |
tgtaggatagtttggtcgacccacataagggttagaatagtttgtaggaataggcactggatgtgatcaggcggtacattcgtttgtgcttgtttatgat |
317 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29014434 |
tgcaggatagtttggtccacccacataagggttagaatagtttgtaggaataggcactggatgtgatcaggcggtacattcgtttgtgcttgtttatgag |
29014533 |
T |
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| Q |
318 |
gtccat |
323 |
Q |
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|||||| |
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| T |
29014534 |
gtccat |
29014539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 29010914 - 29011227
Alignment:
| Q |
18 |
aacagcaccagctgtgcaaatgctccagcacctgctcctattgcgaaacctggaggtcccctctgcctaggagttgttcctgatgatgatggcatattaa |
117 |
Q |
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| T |
29010914 |
aacagcaccagctg--ctaatgctccagcaccggctcccattgcaaatcctggaggtcccctctgcctaggagctgttcctgatgatgatggcatattga |
29011011 |
T |
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| Q |
118 |
aataactcggtgtcaatccatcactacttcgatgaaaattgggaacataaccaaaatttgaaggtggaggtggtggtggaggagtt------------ct |
205 |
Q |
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| T |
29011012 |
aataactcgacgccaatccattattactttgatgaaaattgggaggataaccaacatttgaagttggaggtggtggtggagttcttggtggttggtaact |
29011111 |
T |
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| Q |
206 |
tggtccagaagctgtaggatagtttggtcgacccacataagggttagaatagtttgtaggaataggcactggatgtgatcaggcggtacattcgtttgtg |
305 |
Q |
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|||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| || |||| |
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| T |
29011112 |
tggtccagaagctgcagggtagcttggtccacccacataagggttagaatagtttgtaggatatggcactggatgtgaatag--ggtacattagtctgtg |
29011209 |
T |
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| Q |
306 |
cttgtttatgatgtccat |
323 |
Q |
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||||||||||| |||||| |
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| T |
29011210 |
cttgtttatgaggtccat |
29011227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 24081866 - 24081926
Alignment:
| Q |
263 |
aggaataggcactggatgtgatcaggcggtacattcgtttgtgcttgtttatgatgtccat |
323 |
Q |
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|||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
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| T |
24081866 |
aggaattggcactggatgcgagtaggcggtacattcgtttgtgcttgtttatgaggtccat |
24081926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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