View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9640_low_2 (Length: 280)
Name: NF9640_low_2
Description: NF9640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9640_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 47122488 - 47122216
Alignment:
| Q |
16 |
gatacaaagactaaaaacaaaattcactatatttgtag-aacccaaaactaatttaa-----------------ccaaattatgtaaaagtagagatcaa |
97 |
Q |
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| T |
47122488 |
gatacaaagattaaaaacaaaattcactatatttgtaggaacccaaaactaatttaatcttatttaaaaaagtaccaaattatgtaaaagtagagatcaa |
47122389 |
T |
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| Q |
98 |
accaacatggtaatgactataatgatatctttgataaaatgatacacgagtaataggcacacaactactaggaatataaacctaatacggtc--ctataa |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47122388 |
accaacatggtaatgactataatgatatctttgataaaatgatacacaagtaataggcacacaactactaggaatataaacctaatacggtcctctataa |
47122289 |
T |
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| Q |
196 |
gta-agtgatataatgatgaatgcatagagaaaaggttattgttagtaaaagaaaaagtcgacaaacctctct |
267 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47122288 |
gtatagtgatataatgatgaatgcatagagaaaaggtaattgttagtaaaagaaaaagtcgacaaacctctct |
47122216 |
T |
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