View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9640_low_3 (Length: 267)
Name: NF9640_low_3
Description: NF9640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9640_low_3 |
 | |
|
| [»] scaffold0328 (1 HSPs) |
| | |
|
| [»] scaffold0009 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 22933587 - 22933833
Alignment:
| Q |
16 |
ttttcatcgtaaaggctttctttgaggccaaaatcattcgtcttggcaatgatcttttggtatccgacgaacattttatttagtttttcaatcatggttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22933587 |
ttttcatcgtaaaggctttctttgaggccaaaatcattcgtcttggcaatgatcttttggtatccgacgaacattttatttagtttttcaattatggttc |
22933686 |
T |
|
| Q |
116 |
acattttaaatccttttacagatatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgcta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22933687 |
acattttaaatccttttacagatatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgcta |
22933786 |
T |
|
| Q |
216 |
catttcataggcttaatatgagcagagttatagctccaacaccaaac |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22933787 |
catttcataggcttaatatgagcagagttataggtccaacaccaaac |
22933833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 134 - 260
Target Start/End: Complemental strand, 22981587 - 22981461
Alignment:
| Q |
134 |
cagatatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgctacatttcataggcttaata |
233 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
22981587 |
cagatattaaccaatggaatttaccgaagcattgagcatagaggaacagtaaattcaaagaaggagaggatatccattgctacatttcataggcttcaaa |
22981488 |
T |
|
| Q |
234 |
tgagcagagttatagctccaacaccaa |
260 |
Q |
| |
|
||||||| ||||||| ||||||||||| |
|
|
| T |
22981487 |
tgagcagtgttataggtccaacaccaa |
22981461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 21351331 - 21351467
Alignment:
| Q |
123 |
aaatccttttacagatatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgctacatttca |
222 |
Q |
| |
|
|||||||||| |||||||| || || |||||||||||||||||||| ||||||| || | | ||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
21351331 |
aaatccttttgcagatattaactaacggaatttaccgaagcattgaacatcgagcaacaatcaattcaatgaatgagaggatatcaattgctacatttca |
21351430 |
T |
|
| Q |
223 |
taggcttaatatgagcagagttatagctccaacacca |
259 |
Q |
| |
|
|||| | | ||||||| | || ||| |||||||||| |
|
|
| T |
21351431 |
tagggctcaaatgagcaaaattctaggtccaacacca |
21351467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 21250913 - 21250994
Alignment:
| Q |
146 |
aatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgctacatttcataggc |
227 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| || ||| |||||| | || || ||||| ||||||||| |||||||||||| |
|
|
| T |
21250913 |
aatggaatataccgaagcattgaacatcgagcaacagttaattcagaaaaagaaaggatttccattgctgcatttcataggc |
21250994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 21212425 - 21212529
Alignment:
| Q |
118 |
attttaaatccttttacagatatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgctaca |
217 |
Q |
| |
|
||||||||| ||| ||||||| | |||||||| ||||| ||||| ||||| ||||||| || | || ||| ||||||||||||| |||||||| ||| |
|
|
| T |
21212425 |
attttaaattgtttgacagataatgacgaatggtatttatcgaagtattgaacatcgagcaacgattaactcagagaaggagaggatttccattgccaca |
21212524 |
T |
|
| Q |
218 |
tttca |
222 |
Q |
| |
|
||||| |
|
|
| T |
21212525 |
tttca |
21212529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 9781 - 9869
Alignment:
| Q |
134 |
cagatatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgctacatttca |
222 |
Q |
| |
|
|||||||| || |||||||||||| |||| ||||| ||||||| || |||||||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
9781 |
cagatattgaccaatggaatttacagaagtattgaacatcgagcaacagtgaattcagtgaaggagaggatatctatggctacatttca |
9869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 257
Target Start/End: Complemental strand, 22608 - 22485
Alignment:
| Q |
134 |
cagatatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgctacatttcataggcttaata |
233 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||| ||||||| | || |||||| |||| | |||||| ||||||||| ||||||| || | | | | |
|
|
| T |
22608 |
cagatattgacaaatggaatttatcgaagcattgaacatcgagctacggttaattcagagaaagcgaggatttccattgctgcatttcacagacctcaga |
22509 |
T |
|
| Q |
234 |
tgagcagagttatagctccaacac |
257 |
Q |
| |
|
|||||| |||||||| |||||||| |
|
|
| T |
22508 |
tgagcaaagttataggtccaacac |
22485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 257437 - 257382
Alignment:
| Q |
146 |
aatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagag |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||||| |||||||||| |
|
|
| T |
257437 |
aatggaatttaccgaagcattgaacatcgagcaacagtgaattcagagaaggagag |
257382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 215055 - 214979
Alignment:
| Q |
146 |
aatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgctacatttca |
222 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |||||||||| || || ||||| ||||||| |
|
|
| T |
215055 |
aatggaatttaccgaagcattgaacatcgagcaacggtgaattcggagaaggagagaatctctgttgctgcatttca |
214979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 26913856 - 26913767
Alignment:
| Q |
133 |
acagatatttacgaatggaatttaccgaagcattgagcatcgaggaatagtgaattcaaagaaggagaggatatccattgctacatttca |
222 |
Q |
| |
|
||||||| | |||||||| ||||| ||||| ||||| ||||||| || | | || ||| ||||||||||||| || ||||| |||||||| |
|
|
| T |
26913856 |
acagataatgacgaatggtatttatcgaagtattgaacatcgagcaacaattaactcagagaaggagaggatttcgattgccacatttca |
26913767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University