View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9640_low_4 (Length: 264)
Name: NF9640_low_4
Description: NF9640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9640_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 32177802 - 32177563
Alignment:
| Q |
16 |
ccaagtgcaggaatgggtcatctcacaccattcctaagactagcatcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactg |
115 |
Q |
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| T |
32177802 |
ccaagtgctggaatgggtcatctcacaccattcctaagactagcatcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactg |
32177703 |
T |
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| Q |
116 |
tttctcttgcagaatcacaactccttgatcactttcactcttgtttccctcaagttaaccgtgtcccatttaaccttccacctccaccaccttcttcttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32177702 |
tttctcttgcagaatcacaactccttgatcactttcactcttgtttccctcaagttaaccgtgtcccatttaaccttccacctccaccaccttcttcttc |
32177603 |
T |
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| Q |
216 |
catctccgttgacccttttttccttcgagtccaaaccctt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
32177602 |
catctccgttgacccttttttccttcgagtccaaaccctt |
32177563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 32184963 - 32184809
Alignment:
| Q |
16 |
ccaagtgcaggaatgggtcatctcacaccattcctaagactagcatcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactg |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32184963 |
ccaagtgctggaatgggtcatctcacaccattcctaagactagcatcattgtttcttaacaacaattgcaaagtcactctcatcactcctcttcccactg |
32184864 |
T |
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| Q |
116 |
tttctcttgcagaatcacaactccttgatcactttcactcttgtttccctcaagt |
170 |
Q |
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| T |
32184863 |
tctctcttgcagaatcccagcttcttgatcactttcactcttctttccctcaagt |
32184809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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