View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_1 (Length: 735)
Name: NF9641_low_1
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 563; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 10 - 698
Target Start/End: Complemental strand, 1878155 - 1877463
Alignment:
| Q |
10 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1878155 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacgtcactgaattcattgcttgcaatcac |
1878056 |
T |
|
| Q |
110 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1878055 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaa |
1877956 |
T |
|
| Q |
210 |
attcagaatatatggtatatgttcttaatgatg------atgagtttttgagttgaccatctttttaatcaaaaaccaaaatgaaagttaaaagctggtt |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1877955 |
attcagaatatatggtatatgttcttaatgatgatgatgatgagtttttgagttgaccatctttttaatcaaaaaccaaaatgaaagttaaaagctggtt |
1877856 |
T |
|
| Q |
304 |
gtcttaaattaagatacactcaaaagactttcttattatattattttgagtcatgtgattagtttaatactataattttgatgagatggtgttgacaaaa |
403 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1877855 |
gtcttaaattaagatacactcagaagactttcttattatattattttgagtcatgtgattagtttaatactataattttgataagatggtgttgacaaaa |
1877756 |
T |
|
| Q |
404 |
tatcttaaaagttttgtaaattaatagtattattttgttaccatttacatggaaaattgggccatgatatgaatataacnnnnnnnnnntcttttcacat |
503 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |
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| T |
1877755 |
tatcttaaaagttttgtaaattaatagtattattttgttaccatttacatggaaaattggg-catgatatcaatataa-taaaaaaaaatcttttcacat |
1877658 |
T |
|
| Q |
504 |
tgtcgcactcccaatttttcgatttcaaaactcaaaaatgaaggattttttaacgtgttttgtgcttttcaaattaaataattgaaaatctcgtaagata |
603 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1877657 |
tgtcgcactcccaatttttcgattttaaaactcaaaaatgaaagattttttaacgtgtttcgtgcttttcaaattaaataattgaaaatctcgtaagata |
1877558 |
T |
|
| Q |
604 |
tacgagaaacaagtagaattgnnnnnnnnntcttgtataacaacagtgaaaatgacaacttcactgccacgataatttagatttagcatcttcaa |
698 |
Q |
| |
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||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1877557 |
tacgagaaacaagtagaatagaaaaaaaaatcttgtataacaacggtgaaaatgacaacttcactgccacgataatttagatttagcatcttcaa |
1877463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 1884167 - 1883959
Alignment:
| Q |
10 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
109 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| ||||||||| | ||| | | |||||||| ||| ||||||||| | |||||| |
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| T |
1884167 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcac |
1884068 |
T |
|
| Q |
110 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaa |
209 |
Q |
| |
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||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||| | || |||||||| |||||||||||||| |
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| T |
1884067 |
aacaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaa |
1883968 |
T |
|
| Q |
210 |
attcagaat |
218 |
Q |
| |
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|||||||| |
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| T |
1883967 |
gttcagaat |
1883959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 1890811 - 1890740
Alignment:
| Q |
10 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagcca |
81 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| |||||||| |
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| T |
1890811 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagcca |
1890740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 1911117 - 1910967
Alignment:
| Q |
10 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
109 |
Q |
| |
|
||||||| |||| ||| |||| |||||||||||||||||||| ||||||||| | ||| ||| |||||||| ||| | |||||| || | |||||| |
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| T |
1911117 |
aagcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcac |
1911018 |
T |
|
| Q |
110 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
160 |
Q |
| |
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|| ||| |||| ||||||||| |||||||||||||||||||| ||||| |
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| T |
1911017 |
agcaggtggcagaacatccatgtacaaggaccatcttcttgtcatgtttct |
1910967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 1902072 - 1901922
Alignment:
| Q |
10 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
109 |
Q |
| |
|
||||||| |||| ||| |||| ||||||||||||||||||||| | |||||| | ||| ||| |||||||| ||| ||||||||| | |||||| |
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| T |
1902072 |
aagcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcac |
1901973 |
T |
|
| Q |
110 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
160 |
Q |
| |
|
|||| ||| | || ||||||||||| ||||||||||||||||| ||||| |
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| T |
1901972 |
cacaggtggcaaaacatccatgtaaagtgaccatcttcttgtcatgtttct |
1901922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 1895653 - 1895509
Alignment:
| Q |
18 |
gcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattg |
117 |
Q |
| |
|
|||||||| |||| |||||||||||||||| ||||||||||||| | ||| ||| |||||||| ||| | ||| | | | ||||| | ||||| |
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| T |
1895653 |
gcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattg |
1895554 |
T |
|
| Q |
118 |
gtagaaaatccatgtaaaaggaccatcttcttgtcatctttctat |
162 |
Q |
| |
|
| | || |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
1895553 |
gcaaaacatccatgtaaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 11549179 - 11549123
Alignment:
| Q |
104 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
160 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
11549179 |
aatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 11537506 - 11537453
Alignment:
| Q |
104 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctt |
157 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||| || ||||||||| ||||||| |
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|
| T |
11537506 |
aatcactacaactggtagaaaatctatgtaaaaagatcatcttcttttcatctt |
11537453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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