View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_10 (Length: 323)
Name: NF9641_low_10
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 24511866 - 24511574
Alignment:
| Q |
19 |
attacggacaccgcttaatccatataattgaccctatttaatgggatacatcttagttgtagttttgtttttctagatgaccgataggaactcttttact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||| ||| |
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| T |
24511866 |
attacggacaccgcttaatccatataattgaccctatttagtgggatacatcttagttgtagttttgtttcccttgttgaccgataggaactctttcact |
24511767 |
T |
|
| Q |
119 |
tcctataagt-tttagtcttttgcttattgttcttgtggttagagtttaagccc-atttattcataattaaaaaaatattcattcataatt---nnnnnn |
213 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
24511766 |
tcctataagtatttagtcttttgcttattgttct--tggttagagtttaagccctatttattcataattaaaaaaatatttattcataattaaaaaaaaa |
24511669 |
T |
|
| Q |
214 |
nnncatagtgcagtacaataccacnnnnnnngtttgtttgacttgtagtattgcagtacaatacgacttatttcctttattatagccaatgatgt |
308 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24511668 |
aaacatagtgcagtacaatacgactttttttgtttgtttgacttgtagtattgcagtacaatacgacttatttcctttattatagccaatgatgt |
24511574 |
T |
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