View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_14 (Length: 279)
Name: NF9641_low_14
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_14 |
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| [»] scaffold0510 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 48 - 262
Target Start/End: Complemental strand, 21150692 - 21150478
Alignment:
| Q |
48 |
cttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagtggtaacaccaacttcacaatattagtctcataaccaaaaataaac |
147 |
Q |
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| T |
21150692 |
cttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggcagtggtaacatcaacatcacaatattagtcccataaccaaaaatcaac |
21150593 |
T |
|
| Q |
148 |
tcaccctcattgttggtagattgaacttgttctagtgagtatttggatttgcgtctgcctcacattttttgtgtcctgatttgatatgaatgtgaatttt |
247 |
Q |
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||||||| ||| | || |||||||| ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| |||||| ||||||||| |
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| T |
21150592 |
tcacccttattagttgttgattgaacatgttctagtgagtatttggatttgcatctgcctcacatttctcgtgtcctgatttggtatgaacgtgaatttt |
21150493 |
T |
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| Q |
248 |
gtgaagctagaattc |
262 |
Q |
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||||||||| ||||| |
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| T |
21150492 |
gtgaagctaaaattc |
21150478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 61 - 262
Target Start/End: Complemental strand, 33714308 - 33714109
Alignment:
| Q |
61 |
agaagcattctctttgacaggctcattatttgtagaggtagtggtaacaccaacttcacaatattagtctcat---aaccaaaaataaa-ctcaccctca |
156 |
Q |
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| T |
33714308 |
agaagcattctctttgacaggctcattatttgtagaggtagttgtaaca------tcacaatattagtctcatcataaccaaaaaaaaaactcaccctta |
33714215 |
T |
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| Q |
157 |
ttgttggtagattgaacttgttctagtgagtatttggatttgcgtctgcctcacattttttgtgtcctgatttgatatgaatgtgaattttgtgaagcta |
256 |
Q |
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| T |
33714214 |
ttagtggtagattgaacatgttttggtgagtatttggatatgcgtctgcctcacatttctcgtgtaatgatttgctatgaacgtgaattttgtgaagcta |
33714115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 33726424 - 33726332
Alignment:
| Q |
22 |
tcctttgggagagggagaaggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagtggtaacaccaac |
114 |
Q |
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| T |
33726424 |
tcctttgggagaaggagaaggatccacttcattaatatctgaagccttctctttgacgggctcattatttggagaggtagtggtaacatcaac |
33726332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 23897260 - 23897148
Alignment:
| Q |
117 |
cacaatattagtctcataaccaaaaataaactcaccctcattgttggtagattgaacttgttctagtgagtatttggatttgcgtctgcctcacattttt |
216 |
Q |
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| T |
23897260 |
cacaatattagtctcataaccaagaataaactcaccattattagtggtagattgaacatgtttcaagaagtatttggatttgcgtctgtctcacatttct |
23897161 |
T |
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| Q |
217 |
tgtgtcctgattt |
229 |
Q |
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|||||| ||||| |
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| T |
23897160 |
cgtgtcccgattt |
23897148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 21241737 - 21241801
Alignment:
| Q |
41 |
ggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagtggt |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |
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| T |
21241737 |
ggatacacttcatgaatatcagaagcattctctttgacagagtcataatttgcagaggtagtggt |
21241801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 21286971 - 21286911
Alignment:
| Q |
41 |
ggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtag |
101 |
Q |
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| T |
21286971 |
ggatccacttcatgaatatcagaagcattctctatgacagagtcataatttgcagaggtag |
21286911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 780 - 892
Alignment:
| Q |
117 |
cacaatattagtctcataaccaaaaataaactcaccctcattgttggtagattgaacttgttctagtgagtatttggatttgcgtctgcctcacattttt |
216 |
Q |
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||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |||| | |||||||||||||||||||| ||||||||| | |
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| T |
780 |
cacaatattagtctcataaccaagaataaactcaccattattagtggtagattgaacatgtttcaagaagtatttggatttgcgtctgtctcacatttct |
879 |
T |
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| Q |
217 |
tgtgtcctgattt |
229 |
Q |
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|||||| ||||| |
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| T |
880 |
cgtgtcccgattt |
892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 64918 - 64973
Alignment:
| Q |
138 |
aaaaataaactcaccctcattgttggtagattgaacttgttctagtgagtatttgg |
193 |
Q |
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||||||||||||||||| ||| |||||||| |||| |||| |||||||||||||| |
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| T |
64918 |
aaaaataaactcacccttattagtggtagatagaacatgttttagtgagtatttgg |
64973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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