View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_16 (Length: 254)
Name: NF9641_low_16
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_16 |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 27440998 - 27440759
Alignment:
| Q |
15 |
cataggtcatagttatcattaaaaataatttgaaataaaataatcaactgcacctgggctacactcttctttctagcctcagcaattttgcgcagaatca |
114 |
Q |
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| T |
27440998 |
cataggtcatagttatcattaaaaataatttgaaataaaataatcaactgcacctgggctacactcttctttctagcctcagcaattttgcgcagaatca |
27440899 |
T |
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| Q |
115 |
aattctccatcactgcaggcgaaccccaacttagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaag |
214 |
Q |
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| T |
27440898 |
aattctccatcactgcaggcgaaccccaacttagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaag |
27440799 |
T |
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| Q |
215 |
tttcccctgatgccatgatgagttcatttccacctaaatc |
254 |
Q |
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| T |
27440798 |
tttcccctgatgccatgatgagttcatttccacctaaatc |
27440759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 27443801 - 27443577
Alignment:
| Q |
30 |
tcattaaaaataatttgaaataaaataatcaactgcacctgggctacactcttctttctagcctcagcaattttgcgcagaatcaaattctccatcactg |
129 |
Q |
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| T |
27443801 |
tcattgaaaatagtttgaaataaaataatgagctgcacctgggctacacttttctttctagcctcagcaatttctcgcagaattgaattctccatcactg |
27443702 |
T |
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| Q |
130 |
caggcgaaccccaacttagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaagtttcccctgatgcca |
229 |
Q |
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| T |
27443701 |
caggcgaaccaaaacttagtttgtatcctcctagtggtgaccatgcactcacatgaattcctttctgcttgcagaattctctgagtttcccctgatgcca |
27443602 |
T |
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| Q |
230 |
tgatgagttcatttccacctaaatc |
254 |
Q |
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| T |
27443601 |
tgatgagttcatttccacctaaatc |
27443577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 46 - 254
Target Start/End: Complemental strand, 27429518 - 27429310
Alignment:
| Q |
46 |
gaaataaaataatcaactgcacctgggctacactcttctttctagcctcagcaattttgcgcagaatcaaattctccatcactgcaggcgaaccccaact |
145 |
Q |
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| T |
27429518 |
gaaataaaataatgagctgcacctgggctacactcttctttctagcctctgcaatttcgtgcagaattggattctccatcactgtaggcgaaccccaact |
27429419 |
T |
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| Q |
146 |
tagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaagtttcccctgatgccatgatgagttcatttcc |
245 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||| |
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| T |
27429418 |
tagtttgtatcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctcttagtttcccctgttgccatgatgggttcatctcc |
27429319 |
T |
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| Q |
246 |
acctaaatc |
254 |
Q |
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| T |
27429318 |
acctaaatc |
27429310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 26911095 - 26911214
Alignment:
| Q |
135 |
gaaccccaacttagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaagtttcccctgatgccatgatg |
234 |
Q |
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||||||||| || |||||| |||| | |||||||||||||| |||||| |||||||||| | |||||||||| || ||||| | |||||||| |||| |
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| T |
26911095 |
gaaccccaaaatactttgtatgctcccaatggtgaccatgcacacacatgaattcctttcttcatgcagaattccctgagtttttcttgatgccaagatg |
26911194 |
T |
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| Q |
235 |
agttcatttccacctaaatc |
254 |
Q |
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| T |
26911195 |
gattcatttctacctaaatc |
26911214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 26911054 - 26911093
Alignment:
| Q |
62 |
ctgcacctgggctacactcttctttctagcctcagcaatt |
101 |
Q |
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| T |
26911054 |
ctgcacctgagctacactcttatttctagcctcagcaatt |
26911093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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