View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9641_low_19 (Length: 248)
Name: NF9641_low_19
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 37957845 - 37958071
Alignment:
| Q |
9 |
catcatcaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactt |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957845 |
catcaacaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactt |
37957944 |
T |
|
| Q |
109 |
tcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatctt |
208 |
Q |
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|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37957945 |
tccacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctagctggaaatctt |
37958044 |
T |
|
| Q |
209 |
caatgtcctccacaaccccacaaacct |
235 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
37958045 |
caatgtcctccacaaccccacaaacct |
37958071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 37952110 - 37952336
Alignment:
| Q |
9 |
catcatcaccaagaacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactt |
108 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37952110 |
catcaacaccaagaacaacaacaacttttcttcctctcacattcctcgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactt |
37952209 |
T |
|
| Q |
109 |
tcaacattcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatctt |
208 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37952210 |
tcctcattcaacaacccatttttctaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctt |
37952309 |
T |
|
| Q |
209 |
caatgtcctccacaaccccacaaacct |
235 |
Q |
| |
|
|| ||||||| || ||||||||||||| |
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|
| T |
37952310 |
cactgtcctctaccaccccacaaacct |
37952336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 37897327 - 37897147
Alignment:
| Q |
27 |
caacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaaccca |
126 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||| |||| ||||||||||||||||| ||||||||||| || |
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| T |
37897327 |
caacaatttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaacaactca |
37897228 |
T |
|
| Q |
127 |
tttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
37897227 |
tttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatct |
37897147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 44905830 - 44905646
Alignment:
| Q |
24 |
caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac |
123 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| || |||||| | ||||||||| ||| || || |||||||| | | ||| ||| ||| | |
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| T |
44905830 |
caacaacaacttatcttcctctcacattttttgactagcattttgctgatccagtctacgttaaatgcatattcttcgacccttttgcttatttaaccaa |
44905731 |
T |
|
| Q |
124 |
ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct |
207 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
44905730 |
ccatttttgcaaaacaacacttccatcgctcaaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatct |
44905646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 28166985 - 28166801
Alignment:
| Q |
24 |
caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac |
123 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||||| |||||| ||||||||||| || || | |||| ||| | | ||| ||||||| | |
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|
| T |
28166985 |
caacaacaacttatcttcctttcacattttttgacttgcattttgctggtccagtctacattaaatgaatatttttcgacccttttgcttattcaaccaa |
28166886 |
T |
|
| Q |
124 |
ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct |
207 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28166885 |
ccatttttgcaaaacaacacttccttctctcaaaaaaatttctttctcttactcttcaacatttcttccctcttgctggaaatct |
28166801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 11528744 - 11528562
Alignment:
| Q |
25 |
aacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaacc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| ||||| |||||||||||| ||| ||||||| | | |
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|
| T |
11528744 |
aacaacaacttctcttcctctcacattcctcgacttgcattttgcaggtccagtctacgttaaacgcctattcttctatccttttgcttattcaaccaac |
11528645 |
T |
|
| Q |
125 |
catttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct |
207 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11528644 |
catttttgcaaaacaacactaccatctctcaaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatct |
11528562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 39713137 - 39712954
Alignment:
| Q |
24 |
caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac |
123 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||||| |||||| |||||| |||| | | |||||||||||||||||| |||| ||||| || | |
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|
| T |
39713137 |
caacaactacttatcttcctctcacatttcttgacttgcattttgctggtccaatctacgctaaacgcttattcttctatccttttcctcattctaccaa |
39713038 |
T |
|
| Q |
124 |
ccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||| ||||||||||| |
|
|
| T |
39713037 |
ccatttttgcaaaacaacacttccatctctcaaacagtctctttcatgtgctcttcaacattttttccctcttgctggaaatct |
39712954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 3149622 - 3149715
Alignment:
| Q |
114 |
attcaacaacccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct |
207 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3149622 |
attcaaccagccatttttgcaaaacaacacttccatctctcgaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatct |
3149715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 34539449 - 34539264
Alignment:
| Q |
22 |
aacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaaca |
121 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||||||| |||||| |||||| |||| || || || |||||||| | | ||| ||||||| |
|
|
| T |
34539449 |
aacaacaacaacttatcttcctctcatattttttgacttgcattttgctggtccaatctacattaaatgcatattcttcgacccttttgcttattcaacc |
34539350 |
T |
|
| Q |
122 |
acccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctggctggaaatct |
207 |
Q |
| |
|
| ||||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
34539349 |
aaccattttcgcaaaacaacacttccatctctcaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatct |
34539264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 11148747 - 11148931
Alignment:
| Q |
24 |
caacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaacaac |
123 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||| ||| || || |||||||| | | ||| ||||||| | |
|
|
| T |
11148747 |
caacaacaacttatcttcctctcacattttttgacttgcattttgttggtccagtctacgttaaatgcatattcttcgacccttttacttattcaaccaa |
11148846 |
T |
|
| Q |
124 |
ccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
11148847 |
ccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactgttcaacatttcttcccttttgctggaaatct |
11148931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 38757968 - 38757782
Alignment:
| Q |
22 |
aacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcaacattcaaca |
121 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||| ||||| ||||| ||||||||||| ||| || || |||||||| | | ||| ||||||| |
|
|
| T |
38757968 |
aacaacaacaacttatcttcctctaacattttttgccttgcattttgttggtccagtctacgttaaatgcatattcttcgacccttttgcttattcaacc |
38757869 |
T |
|
| Q |
122 |
acccatttttgtaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctctggctggaaatct |
207 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
38757868 |
aaccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatct |
38757782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 13223324 - 13223382
Alignment:
| Q |
22 |
aacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtct |
80 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| || |||||| |||||| |||||||||| |
|
|
| T |
13223324 |
aacaacaacaacttatcttcctctcaaatttttttacttgcattttgctggtccagtct |
13223382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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