View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_20 (Length: 245)
Name: NF9641_low_20
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 46540397 - 46540154
Alignment:
| Q |
1 |
tgtagttccaccaccgcgaaaataattgcggaattgtttcacagaaaagtggattaggattccaccaaattgagattttgtgtatagtggttgtttaatg |
100 |
Q |
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| T |
46540397 |
tgtagttccaccaccgcgaaaataattgtggaattgtttcacagaaaagtggattaggattccaccaaattgagattttgtgtatagtggttgtttaatg |
46540298 |
T |
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| Q |
101 |
tgcgtgtctgatttgtcaa-----------------atacaatttgaaaagaatgactaaataaaagtttcacatgttactcaaatattcatctgagatg |
183 |
Q |
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| T |
46540297 |
tgcgtgtctgatttgtcaaaccacatgatttctatcatacaatttgaaaataatgactaaataaaagtttcacatgttactcaaatattcatctgagatg |
46540198 |
T |
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| Q |
184 |
aataactaaataagtgcaagtagcaggtttatgatggcacattg |
227 |
Q |
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| T |
46540197 |
aataactaaataagtgcaagtagcaggtttatgatggcacattg |
46540154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 39255576 - 39255665
Alignment:
| Q |
1 |
tgtagttccaccaccgcgaaaataattgcggaattgtttcacagaaaagtggatt----aggattccaccaaattgagattttgtgtata |
86 |
Q |
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| T |
39255576 |
tgtagctccaccaccgcgaccataatcgtagaatcgtttcacagaaaagtggattatacaggattccacccagttgggattttgtgtata |
39255665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 47034649 - 47034704
Alignment:
| Q |
1 |
tgtagttccaccaccgcgaaaataattgcggaattgtttcacagaaaagtggatta |
56 |
Q |
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| T |
47034649 |
tgtagttccaccaccgtgactttaatcgtggaattgtttcacagaaaagtggatta |
47034704 |
T |
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