View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_24 (Length: 209)
Name: NF9641_low_24
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 39235751 - 39235885
Alignment:
| Q |
15 |
tggtggtcctccaacataataacaagagaaggtggcatttcaacatctgaggaatccaaaagtaactcatcaaatcatcgactt----------aggaat |
104 |
Q |
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| T |
39235751 |
tggtggtcctccaacttaataacaagagaaggtggcatttcaacatctgaggaatccaaaagtaactcatcaaatcatcgactttgaattcgggaggaat |
39235850 |
T |
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| Q |
105 |
ttcatttatgtcgagaccaataaatggttcttgat |
139 |
Q |
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| T |
39235851 |
ttcatttatgtcgagaccaataaatggttcttgat |
39235885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 39235958 - 39236007
Alignment:
| Q |
142 |
gacatacccaaggaacactcacattcacacctgcttcaacttgtgtaagt |
191 |
Q |
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| T |
39235958 |
gacatatccaaggaacactcacatttccacccgcttcaacttgtgtaagt |
39236007 |
T |
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