View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_4 (Length: 453)
Name: NF9641_low_4
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 43602827 - 43603265
Alignment:
| Q |
1 |
ttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagatctttctctgttcggtttgccgatccttgtaaatttattaat |
100 |
Q |
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| T |
43602827 |
ttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagatctttctctgttcggtttgccgatccttgtaaatttattaat |
43602926 |
T |
|
| Q |
101 |
tatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagcaatgtttgcatctctttttcttcatattacttagcctatag |
200 |
Q |
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| T |
43602927 |
tatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagcaatgtttgcatctctttttcttcatattacttagcctatag |
43603026 |
T |
|
| Q |
201 |
tctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatttgtaatataagtgagaccattgcacggtggagttcaatttt |
300 |
Q |
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| T |
43603027 |
tctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatttgtaatataagtgagaccattgcacggtggagttcaatttt |
43603126 |
T |
|
| Q |
301 |
attgatggagaagttatgacttatggggaaattatttttcacaagggttgtaaagtttttaatttgtgcatggggtg-------taagagttaagaagtg |
393 |
Q |
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| T |
43603127 |
attgatggagaagttatgacttatggggaaattatttttcataagggtagtaaagtttttaatttgtgcatggggtgtaagagttaagagttaagaagtg |
43603226 |
T |
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| Q |
394 |
aagtgatgagaggttaaatgtttgatctccattctcacc |
432 |
Q |
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| T |
43603227 |
aagtgatgagaggttaaatgtttgatctccattctcacc |
43603265 |
T |
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