View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_5 (Length: 445)
Name: NF9641_low_5
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 36445470 - 36445871
Alignment:
| Q |
13 |
atttatacatatgaagttggttaaaagacaaggaccgtgtgtataattaaggtatgcaggtgtacgaattcttaacttannnnnnnnnnnnnnnnnnnnn |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36445470 |
atttatacatatgaagttggttaaaagacaaggaccgtgtgtataattaaggtatgcaggtgtacgaattcttaacttattttgtttgtttatgt----- |
36445564 |
T |
|
| Q |
113 |
nataggcattatcaaatggtagatacaagagttgcttacatagggcagtggttaataggtacaaagagaggaggtccttagcattctttctgtgcccaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36445565 |
-ataggcattatcaaatggtagatacaagagttgcttgcatagggcagtggttaataggtacaaagagaggaggtccttagcattctttctgtgcccaaa |
36445663 |
T |
|
| Q |
213 |
agaagacaagatggtgagaccctcacaagatattgtgagtagagatgggacaaaacaatatcctgatttcacatggtcacaattgcttcaattcacacaa |
312 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36445664 |
agaagacaaaatggtgagaccctcacaagatattgtgagtagagatgggacaaaacaatatcctgatttcacatggtcacaattgcttcaattcacacaa |
36445763 |
T |
|
| Q |
313 |
aatcactacagagctgacgaagctacactgcaaaatttcaccaagtggttactatcttccaaaattattacaaacactaatttaccttgattaacaaaca |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
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| T |
36445764 |
aatcactacagagctgacgaagctacactgcaaaatttcaccaagtggttactatcttccaaa---attacaaacac---tttaccttgattaaccaaca |
36445857 |
T |
|
| Q |
413 |
aattttacttattt |
426 |
Q |
| |
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|||||||||||||| |
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| T |
36445858 |
aattttacttattt |
36445871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 116 - 375
Target Start/End: Original strand, 40555291 - 40555550
Alignment:
| Q |
116 |
aggcattatcaaatggtagatacaagagttgcttacatagggcagtggttaataggtacaaagagaggaggtccttagcattctttctgtgcccaaaaga |
215 |
Q |
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|||||||||||||||| || |||||||||||| ||||||||||||||||||| | | || |||| ||||| || || |||||||| || || ||||| |
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| T |
40555291 |
aggcattatcaaatggaaggtacaagagttgcctacatagggcagtggttaaccagcataagcagagaaggtcgttggctttctttctatgtcccaaaga |
40555390 |
T |
|
| Q |
216 |
agacaagatggtgagaccctcacaagatattgtgagtagagatgggacaaaacaatatcctgatttcacatggtcacaattgcttcaattcacacaaaat |
315 |
Q |
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||| ||| ||||||||||| | || |||||| | || ||||||||||| ||||| ||||| ||||| ||||||||| | |||||| ||||||| |||||| |
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| T |
40555391 |
agataaggtggtgagaccccctcatgatattattagcagagatgggaccaaacagtatccagattttacatggtcagatttgcttgaattcactcaaaat |
40555490 |
T |
|
| Q |
316 |
cactacagagctgacgaagctacactgcaaaatttcaccaagtggttactatcttccaaa |
375 |
Q |
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| T |
40555491 |
tattacagagcagatgaatccacactctcaaatttcaccaactggttgctatcttccaaa |
40555550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 22553106 - 22553066
Alignment:
| Q |
124 |
tcaaatggtagatacaagagttgcttacatagggcagtggt |
164 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||| |
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| T |
22553106 |
tcaaatgggagatacaagagttgtttacatagggcagtggt |
22553066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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