View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_6 (Length: 410)
Name: NF9641_low_6
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 7218661 - 7218266
Alignment:
| Q |
1 |
aaaagaaataataatgtaagttcacacttatgaggtacatatatatgaatgaatcatgtgaattgtgtaaagttgaataaattcttactaatgacaggaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218661 |
aaaagaaataataatgtaagttcacacttattaagtacatatat--gaatgaatcatgtgaattgtgtaaagttgaataaattcttactaatgacaggaa |
7218564 |
T |
|
| Q |
101 |
tgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatcaatcaacattacatcgaaacagtcctttctttccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7218563 |
tgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgaggatcaatcaacattacatcgaaacagtcctttctttccaa |
7218464 |
T |
|
| Q |
201 |
catgttgaaggcatcagaagccatactacatttggtaactgaaataaacaatatcagaataaagaaacatgaaaacatataaaagtaagaatttttacca |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218463 |
catgttgaaggcatcagaagccatgctacatttggtaactgaaataaacaatatcagaataaagaaacatgaaaacatataaaagtaagaatttttacca |
7218364 |
T |
|
| Q |
301 |
aaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtc |
398 |
Q |
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| T |
7218363 |
aaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtc |
7218266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 7317403 - 7317650
Alignment:
| Q |
4 |
agaaataataatgtaagttcacacttatgaggtacatatatatgaatgaatcatgtgaattgtgtaaagttgaataaattcttactaatgacaggaatgt |
103 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
7317403 |
agaaataataatgtaagttcacacttattaagtacatatatatgaatgaatcatgtgaattgtgtaaagttgaagaaattcttactaatgacaggaattt |
7317502 |
T |
|
| Q |
104 |
tgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatcaatcaacattacatcgaaacagtcctttctttccaacat |
203 |
Q |
| |
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||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |
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| T |
7317503 |
tgagtagtagggtaacatgttggacaaagtcataaacatccatgtttggcatatgagcatcaatcaacattacatcaaaacagtcctttctttccatcga |
7317602 |
T |
|
| Q |
204 |
gttgaaggcatcagaagccatactacatttggtaactgaaataaacaa |
251 |
Q |
| |
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|| |||||||||||||| || | ||||||||||||||||||||||| |
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| T |
7317603 |
attcaaggcatcagaagctgtattgcatttggtaactgaaataaacaa |
7317650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 7244105 - 7243922
Alignment:
| Q |
65 |
gtgtaaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatc |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7244105 |
gtgtaaagttgaataaattcttactaatgacaggaatgttgagttgtagggtaacatgttggacaaagtcataagcatccatgtttggcatatgaggatc |
7244006 |
T |
|
| Q |
165 |
aatcaacattacatcgaaacagtcctttctttccaacatgttgaaggcatcagaagccatactacatttggtaactgaaataaa |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||| |
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| T |
7244005 |
aatcaacattacatcgaaacagtcctttctttccaacaagttcaaggcatcagaagctgtgttacatttggtaactgaaataaa |
7243922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 66 - 398
Target Start/End: Complemental strand, 8162314 - 8161980
Alignment:
| Q |
66 |
tgtaaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatca |
165 |
Q |
| |
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||||||||| |||||||||||||| || ||||||| | ||||||||| |||| ||||||||||||| | |||||||||||||||||| ||| |||| |
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| T |
8162314 |
tgtaaagttaaataaattcttactgatagcaggaatctgaagttgtagggaaacatgttggacaaagtcacaggcatccatgtttggcatacgagcatca |
8162215 |
T |
|
| Q |
166 |
atcaacattacatcgaaacagtcctttctt-tccaacatgttgaaggcatcagaagccatactacatttggtaactgaaataaacaatatcagaataaag |
264 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||||| | || ||||||||||||| | |||||||||||||| | |||||||| | ||||| |
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| T |
8162214 |
atcaacattacatcgaaacagcacttttttgtccaacaaatccaatgcatcagaagccacattacatttggtaactaatccaaacaataaaaagataaac |
8162115 |
T |
|
| Q |
265 |
aaacatgaaaacatataaaagtaaga-atttttaccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgatta |
363 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||||| | || || |||||||| |||||||||| |||||| | |||||||||||||||| |
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| T |
8162114 |
aaacatgaaaacaaattaaagtaagatatttttaccaaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcatcgatta |
8162015 |
T |
|
| Q |
364 |
cacatctcctcgatggaattcaggagagtgatgtc |
398 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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|
| T |
8162014 |
cacatctcctcgatggaattaaggagagtgatgtc |
8161980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 7324256 - 7324439
Alignment:
| Q |
68 |
taaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatcaat |
167 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||| | || |||||||||||||||| |||||||||| |||||||||| |||||| |
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| T |
7324256 |
taaagttgaagaaattcttactaataacaggaatgttgagttgtagggtagcattttggacaaagtcatagacatccatgttcggcatatgagcatcaat |
7324355 |
T |
|
| Q |
168 |
caacattacatcgaaacagtcctttctttccaacatgttgaaggcatcagaagccatactacatttggtaactgaaataaacaa |
251 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| || || ||||||||||| | | ||||||||||||||||||||||| |
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|
| T |
7324356 |
caacattacatcataacagtcctttctttccaacaagtacaaagcatcagaagctgaattgcatttggtaactgaaataaacaa |
7324439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 22766295 - 22766478
Alignment:
| Q |
68 |
taaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagcatccatgtttggcatatgagtatcaat |
167 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||| |||||||| | | || ||| ||||| ||||| |||||||||||||||||||||| |||||| |
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|
| T |
22766295 |
taaagttgaagaaatacttactaataacaggaatattgagttgaccggtagcatgttgaacaaaatcataggcatccatgtttggcatatgagcatcaat |
22766394 |
T |
|
| Q |
168 |
caacattacatcgaaacagtcctttctttccaacatgttgaaggcatcagaagccatactacatttggtaactgaaataaacaa |
251 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||| ||||| |||||||| || | ||||||||||||||||||||||| |
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|
| T |
22766395 |
taacattacatcaaaacagtcctttctttccaacaagttcaaggcttcagaagctgtattgcatttggtaactgaaataaacaa |
22766478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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