View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9641_low_9 (Length: 367)
Name: NF9641_low_9
Description: NF9641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9641_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 99 - 338
Target Start/End: Complemental strand, 21355212 - 21354973
Alignment:
| Q |
99 |
aattgaacaatggtaattttgatgttgtgttcattatgaaattagccatacattttaagagaagtatacagtgtgaaccttatattggttattgacacta |
198 |
Q |
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| T |
21355212 |
aattgaacaatgataaatttgatgttgtgttcattataaaattagccatgtagtttaagagaagtatacagtgtgaaccttatacaggttattgacacta |
21355113 |
T |
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| Q |
199 |
gatatgataattactaattaatagtagtagtaagagatagttattaagattactagttgcaatttgtgcaactaggtagtgtctacttaatatggggcag |
298 |
Q |
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|||||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
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| T |
21355112 |
gatatgattggtattaattactagtagtagtagaagatagttattaagattactagttgcaatttgtgcaactaggtagtgtttagttaatgtggggcag |
21355013 |
T |
|
| Q |
299 |
attagtaagttaaggatctttcctccgagcacagaggaaa |
338 |
Q |
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| T |
21355012 |
attagtaagctaaggatctttcctccgagcacagaggaaa |
21354973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 160 - 326
Target Start/End: Original strand, 42642228 - 42642394
Alignment:
| Q |
160 |
aagtatacagtgtgaaccttatattggttattgacactagatatgataattactaattaatagtagtagtaagagatagttattaagattactagttgca |
259 |
Q |
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| T |
42642228 |
aagtatacagcgtgaacctggtataaggtagtgccactagatattattattactaattactagtagaagtaaaagatagttattaagatttctagttgca |
42642327 |
T |
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| Q |
260 |
atttgtgcaactaggtagtgtctacttaatatggggcagattagtaagttaaggatctttcctccga |
326 |
Q |
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| T |
42642328 |
atttgtgcaactaggtagtgtttagttaatgtgggacagattagtaagctaaggatctttcctccga |
42642394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 23855387 - 23855537
Alignment:
| Q |
64 |
gtagaaaacatgttaatgtaaaagacatattggtcaattgaacaatggtaattttgatgttgtgttcattatgaaattagccatacattttaagagaagt |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23855387 |
gtagaaaacatgttaatgtaaaagacatattggtcaattgaacaatggtaattttgatgttgtgttcattatgaaattagccatacattttaagagaagt |
23855486 |
T |
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| Q |
164 |
atacagtgtgaaccttatattggttattgacactagatatgataattacta |
214 |
Q |
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| T |
23855487 |
atacagtgtgaaccttatattggttattgacactatatatgattattacta |
23855537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 213 - 351
Target Start/End: Original strand, 23855813 - 23855951
Alignment:
| Q |
213 |
taattaatagtagtagtaagagatagttattaagattactagttgcaatttgtgcaactaggtagtgtctacttaatatggggcagattagtaagttaag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
23855813 |
taattaatagtagtagtaagagatagttattaagattactatttgtaacttgtgcaactaggtagtgtctagttaatatggggcagattagtaagctaag |
23855912 |
T |
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| Q |
313 |
gatctttcctccgagcacagaggaaagtcttagatgtcc |
351 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
23855913 |
gatctttcctccgagcacagaggaaagtcttaggtgtcc |
23855951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 23855361 - 23855398
Alignment:
| Q |
7 |
atttgttcattaattgggacattcaagtagaaaacatg |
44 |
Q |
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| T |
23855361 |
atttgttcattaattgggacattcatgtagaaaacatg |
23855398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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