View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9642_1 (Length: 707)
Name: NF9642_1
Description: NF9642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9642_1 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 235 - 681
Target Start/End: Complemental strand, 40586845 - 40586399
Alignment:
| Q |
235 |
aaagtacttgtagatctgggtcaaagttggtcnnnnnnntggaacctttcaaacttgtgtattttcttagctctagatagaaaaacagggaaggtcaaaa |
334 |
Q |
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| T |
40586845 |
aaagtacttgtagatctgggtcaaagttggtcaaaaaaatggaacctttcaaacttgtgtattttcttagctctagatagaaaaacagggaagttcaaaa |
40586746 |
T |
|
| Q |
335 |
tgaaagttagaaaagttgaagattgtttcttttgttaaatttatttaaagatgatagttatttaaggattttggtgtgagggttgtgtttatttatttta |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40586745 |
tgaaagttagaaaagttgaagattgtttcttttgttaaatttatttaaagatgatagttatttaaggattttggtgtgagggttgtgtttatttatttta |
40586646 |
T |
|
| Q |
435 |
cctatttatgtgtgttttgaatttggttggtggtagtggagtttgtttacttggagtttccttgaagggattatatacattttgtttgttgccctttttt |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40586645 |
cctatttatgtgtgttttgaatttggttggtggtagtggagtttgtttacttggagtttccttgaagggattatatacattttgtttgttgccctttttt |
40586546 |
T |
|
| Q |
535 |
gttgaatgctgattcaatggggtcacataagctgcaaacaattgctttttctagtactatataaagaataaatcaaattccttcttctttttatttctta |
634 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40586545 |
gttgaatgctgattcaatggggtcacataagctgcaaacaattgctttttctagtactatataaagaataaatcaaattccttattctttttatttctta |
40586446 |
T |
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| Q |
635 |
cttaatcttagattcttattgcaggaatagtaggtcaggggatttga |
681 |
Q |
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| T |
40586445 |
cttaatcttagattcttattgcaggaatagtaggtcaggggatttga |
40586399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 40587023 - 40586905
Alignment:
| Q |
57 |
gtttaaagttgcttggtgctttctctagtcaacacaacatgcagacaaattttcctannnnnnngggtttctttcttagaagtatagtagcttgcttttc |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40587023 |
gtttaaagttgcttggtgctttctctagtcaacacaacatgcagacaaattttcctatttttttgggtttctttcttagaagtatagtagcttgcttttc |
40586924 |
T |
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| Q |
157 |
atgttgttgtagcagaatc |
175 |
Q |
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||||||||||| ||||||| |
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| T |
40586923 |
atgttgttgtaacagaatc |
40586905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 505
Target Start/End: Original strand, 28730925 - 28730990
Alignment:
| Q |
440 |
ttatgtgtgttttgaatttggttggtggtagtggagtttgtttacttggagtttccttgaagggat |
505 |
Q |
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|||| ||||| || |||||| | ||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
28730925 |
ttatatgtgtatttaatttgttaggtggtagtggagttagtttatttggagtttctttgaagggat |
28730990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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