View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9642_2 (Length: 520)
Name: NF9642_2
Description: NF9642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9642_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Complemental strand, 37979107 - 37978604
Alignment:
| Q |
12 |
acagatgaattgaataaaatattgcatgatttagatttcaagatctgaatggttattcccatctcttcttctagctccttatcgatnnnnnnnnnnnnnn |
111 |
Q |
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| T |
37979107 |
acagatgaattgaataaaatattgcatgatttagatttcaagatctgaatggttattcccatctcttcttctagctccttatcaattatatatatatat- |
37979009 |
T |
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| Q |
112 |
ncattcaaactaaatagtatatatggattcagatttatcacattttttaaattttcttgacttcctttaaatcactataaaattacatgaacttttatat |
211 |
Q |
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| T |
37979008 |
-cattcaaactaa-tagtatat--ggattcagatttatcacattttttaaattttcttgacttcctttaaatcactataaaattacatgaacttttatat |
37978913 |
T |
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| Q |
212 |
tataagccaaaaagtcgtgcctattactatagtatatagtatatggagtacactatatgctcaaattaatagattggagaattcaggtacgaattatcac |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | ||||||| |
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| T |
37978912 |
tataagccaaaaagtcgtgcctattactatagtatatagtatatggagtacactatatgctcaaattaatagagtggagaattcagataagcattatcaa |
37978813 |
T |
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| Q |
312 |
cgacgcatctacacggatacttacacaaacatttgccatttggtaaaaaaccaaactgaattaaacccctcttaatatatcatttaattaatttaatcta |
411 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37978812 |
cgacgcatctacacggatacgtacacaaacatttgccatttggcaaaaaaccaaactgaattaaacccctcttaatatatcatttaattaatttaatcta |
37978713 |
T |
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| Q |
412 |
ggcttcaatcttttgggaatgaataatattgtggatcgtgatatataacatggtagggctttggtgtatatgaagatatcttgctcaatgcaggccagac |
511 |
Q |
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| T |
37978712 |
ggcttcaatcttttgggaatgaataatattgtggatcgtgatatataacttggtagggctttggtgtatatgaagatatcttgctcaatgcaggccagac |
37978613 |
T |
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| Q |
512 |
ctaaagttg |
520 |
Q |
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| T |
37978612 |
ctaaagttg |
37978604 |
T |
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