View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9642_8 (Length: 305)
Name: NF9642_8
Description: NF9642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9642_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 43894435 - 43894177
Alignment:
| Q |
25 |
gatctgcctttgataattgagaccaatgtttgaaaatccaattgtgtgaaatctaaatacacctttttatatgaaattgttaaatcaaactctaataaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43894435 |
gatctgcctttgataattgagaccaatgtttgaaaatccaattgtgtgaaatctaaatacacctttttatatgaaattgttaaatcaaactctaataaaa |
43894336 |
T |
|
| Q |
125 |
tatttcacctctcattcaataacgatttcaatgcattatatgttgtttcctattttgcgattgtgctgcaatgggtcattcctcggtgtttgatgaaatt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43894335 |
tatttcacctctcattcaataacgatttcaatgcattatattttgtttcctattttgtgattgtgctgcaatgggtcattcctcggtgtttgatgaaatt |
43894236 |
T |
|
| Q |
225 |
atgggagtggaggttcaggtgtatctaagtatttggtcttgaattaatatgattctgtg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43894235 |
atgggagtggaggttcaggtgtatctaagtatttggtcttgaattaatatgattctgtg |
43894177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 44304866 - 44304615
Alignment:
| Q |
26 |
atctgcctttgataattgagaccaatgtttgaaaatccaattgtgtgaaatctaaatacacctttttatatgaaattgttaaatcaaactctaataaaat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44304866 |
atctgcctttgataattgagaccaatgtttgaaaatccaattgtgtgaaatctaaatacacctttttatatgaaattgttaaatcaaactctaataaaat |
44304767 |
T |
|
| Q |
126 |
atttcacctctcattcaataacgatttcaatgcattatatgttgtttcctattttgcgattgtgctgcaatgggtcattcctcggtgtttgatgaaatta |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44304766 |
atttcacctctcattcaataacgatttcaatgcattatattttgtttcctattttgtgattgtgctgcaatgggtcattcctcggtatttgatgaaatta |
44304667 |
T |
|
| Q |
226 |
tgggagtggaggttcaggtgtatctaagtatttggtcttgaattaatatgattctgtg |
283 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44304666 |
tgggagtggaggttcaggtgt------gtatttggtcttgaattaatatgattctgtg |
44304615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 44295056 - 44294953
Alignment:
| Q |
178 |
tttgcgattgtgctgcaatgggtcattcctcggtgtttgatgaaattatgggagtggaggttcaggtgtatctaagtatttggtcttgaattaatatgat |
277 |
Q |
| |
|
|||| ||||| |||||||| ||||| || || ||||| |||||||||||||||||| ||||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
44295056 |
tttgtgattgagctgcaataggtcaatcatcagtgttggatgaaattatgggagtgtaggttgaagtatatctaagtatttggtcttgaattaatatgat |
44294957 |
T |
|
| Q |
278 |
tctg |
281 |
Q |
| |
|
|||| |
|
|
| T |
44294956 |
tctg |
44294953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 44295224 - 44295103
Alignment:
| Q |
43 |
gagaccaatgtttgaaaatccaattgtgtgaaatctaaatacacct-ttttatatgaaattgttaaatcaaactctaataaaatatttcacctc-tcatt |
140 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| ||| | ||| |||||| |||||||| | ||||||||||| |||||||| |||||| ||| | |
|
|
| T |
44295224 |
gagacgaatgtttgaaa-tccaattgtgtgaaatccaaaaataccccttttattaaaaattgttgactcaaactctaacaaaatattccacctcttcaat |
44295126 |
T |
|
| Q |
141 |
caataacgatttcaatgcattat |
163 |
Q |
| |
|
||| ||||||||||| ||||||| |
|
|
| T |
44295125 |
caacaacgatttcaacgcattat |
44295103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University