View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9643_high_6 (Length: 244)
Name: NF9643_high_6
Description: NF9643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9643_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28585696 - 28585925
Alignment:
| Q |
1 |
tttttaatcagaaaacatacttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatat |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585696 |
tttttaattagaaaacatacttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatat |
28585795 |
T |
|
| Q |
101 |
caaatccttctcttccttcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585796 |
caaatccttctcttccttcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgt |
28585895 |
T |
|
| Q |
201 |
atagcttcattatgttcttggtttcttgat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28585896 |
atagcttcattatgttcttggtttcttgat |
28585925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 28579560 - 28579778
Alignment:
| Q |
12 |
aaaacatacttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatatcaaatccttct |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28579560 |
aaaacatacttggaaacctcaatggtctcattctgattcatgaacctaaccatggtggaattgattttagcaagttcctctaaacatatcaaatccttct |
28579659 |
T |
|
| Q |
112 |
cttccttcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgtatagcttcatt |
211 |
Q |
| |
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| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28579660 |
cagccttcaaatcatggatgaatgtgcttttatccatgaatcttgacaagccatagtgaagtggattctgaagagtgtttgcaacatgtatagcttcatt |
28579759 |
T |
|
| Q |
212 |
atgttcttggtttcttgat |
230 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
28579760 |
atgttcttggtttcttgat |
28579778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28574497 - 28574726
Alignment:
| Q |
1 |
tttttaatcagaaaacatacttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
28574497 |
tttttaattagaaaacatacttggaaacttcaatggtctcattctgattcctgaacctaactatggtggaattgattttagcaagttcctctaaacatat |
28574596 |
T |
|
| Q |
101 |
caaatccttctcttccttcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgt |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |||||||| |
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|
| T |
28574597 |
caaatccttctcagccttcaaatcatggatgaatgtgcttttatccataaatcttgacaagccatagtgaagaggattctgaagagtgtttacaacatgt |
28574696 |
T |
|
| Q |
201 |
atagcttcattatgttcttggtttcttgat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28574697 |
atagcttcattatgttcttggtttcttgat |
28574726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 26315551 - 26315779
Alignment:
| Q |
1 |
tttttaatcagaaaacatacttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||| |
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|
| T |
26315551 |
tttttaattagaaaacatacttggaaacttcagtggtctcattctgattcatgaacctaactatggtggagttgattttagcaagttcctctaaacatag |
26315650 |
T |
|
| Q |
101 |
caaatccttctcttccttcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgt |
200 |
Q |
| |
|
|||||||||||| |||||| |||||||||| |||| |||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||| | |
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|
| T |
26315651 |
caaatccttctcatccttcgaatcatggatgaatgcgcttttatccataaatcttgataagccataatgaagtggattctgaagagtgtttgcaacatat |
26315750 |
T |
|
| Q |
201 |
atagcttcattatgttcttggtttcttga |
229 |
Q |
| |
|
||||||| |||||||||||||| |||||| |
|
|
| T |
26315751 |
atagcttgattatgttcttggtgtcttga |
26315779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 28567669 - 28567897
Alignment:
| Q |
1 |
tttttaatcagaaaacatacttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatat |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
28567669 |
tttttaaccagaaaacatacttggaaacttcaatggtttcattctggttcatgaacctaactatgccagaattgattttagcaagttcctctaaacatat |
28567768 |
T |
|
| Q |
101 |
caaatccttctcttccttcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||| || |||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| | |
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|
| T |
28567769 |
caaatccttctcagccttcaaatcatgcatgaatgtgtttttatccataaatcttgacaatccatagtgaagtggattctgaagagtgtttgcaacatat |
28567868 |
T |
|
| Q |
201 |
atagcttcattatgttcttggtttcttga |
229 |
Q |
| |
|
| ||| || |||||||||||||||||||| |
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|
| T |
28567869 |
aaagcatccttatgttcttggtttcttga |
28567897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 20616878 - 20617067
Alignment:
| Q |
18 |
tacttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatatcaaatccttctcttcct |
117 |
Q |
| |
|
|||||| ||||||||| | |||| || | ||||||||| ||||||| |||| || |||||||||||||| |||||||| ||| | | |||| ||| |
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|
| T |
20616878 |
tacttgaaaacttcaacgctctcgtttttgttcatgaacttaactatgctggagttcattttagcaagttcatctaaacagatccatttgttcttagcct |
20616977 |
T |
|
| Q |
118 |
tcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgtatagctt |
207 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||| ||||||||||| || ||||||| || | ||||||||||||| ||||| |||||||| |
|
|
| T |
20616978 |
tcaaatcattgatgaatatgcttttatccataaatcttgacaaaccatagtgaatagggtattgaagagtgtttgaaacatatatagctt |
20617067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 24071128 - 24071345
Alignment:
| Q |
12 |
aaaacatacttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatatcaaatccttct |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||||||||| ||||||| |||| ||||| ||||||||||| | |||||||||||||||||| | |
|
|
| T |
24071128 |
aaaacatacttggaaacttcagtggtctcattctggttcatgaacctaactatgctggagttgatattagcaagttcctttaaacatatcaaatcctttt |
24071227 |
T |
|
| Q |
112 |
cttccttcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgtatagcttcatt |
211 |
Q |
| |
|
| ||||||||| |||||| ||| || || ||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
24071228 |
cagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacatataaagcttcatt |
24071327 |
T |
|
| Q |
212 |
atgttcttggtttcttga |
229 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
24071328 |
atgttcttgatttcttga |
24071345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 24079608 - 24079391
Alignment:
| Q |
12 |
aaaacatacttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatatcaaatccttct |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||||||||| ||||||| |||| ||||| ||||||||||| | |||||||||||||||||| | |
|
|
| T |
24079608 |
aaaacatacttggaaacttcagtggtctcattctggttcatgaacctaactatgctggagttgatattagcaagttcctttaaacatatcaaatcctttt |
24079509 |
T |
|
| Q |
112 |
cttccttcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgtatagcttcatt |
211 |
Q |
| |
|
| ||||||||| |||||| ||| || || ||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
24079508 |
cagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacatataaagcttcatt |
24079409 |
T |
|
| Q |
212 |
atgttcttggtttcttga |
229 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
24079408 |
atgttcttgatttcttga |
24079391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 2601804 - 2601625
Alignment:
| Q |
19 |
acttggaaacttcaatggtctcattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatatcaaatccttctcttcctt |
118 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || | || || |||| |
|
|
| T |
2601804 |
acttggaaacttcaatgatttcattctgattcatgaacctaactatgctggaattgattttagcaagttcttctaaacatgtccattcattagtggcctt |
2601705 |
T |
|
| Q |
119 |
caaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacat |
198 |
Q |
| |
|
||||| | | ||| ||||||| ||||| || ||||||||||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
2601704 |
caaataacttaggaatatgcttttttccattaaccttgacaagccatagtgaagtggatatcgaagagtgtttgtaacat |
2601625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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