View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9643_low_11 (Length: 251)
Name: NF9643_low_11
Description: NF9643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9643_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 15995203 - 15995256
Alignment:
| Q |
64 |
ttatatgttaagtatggagacatacaaataatgcattcttgtattatgctaaaa |
117 |
Q |
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| T |
15995203 |
ttatatgttaagtatggaggcctacaaataatgcattcttgtattatgctaaaa |
15995256 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 15995032 - 15995066
Alignment:
| Q |
18 |
ggaagtagataaatcaagtagcaagtagaagaatt |
52 |
Q |
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| T |
15995032 |
ggaagtagataaataaagtagcaagtagaagaatt |
15995066 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 38951098 - 38951151
Alignment:
| Q |
64 |
ttatatgttaagtatggagacatacaaataatgcattcttgtattatgctaaaa |
117 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |
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| T |
38951098 |
ttatatgttaagtatggaggcctacaaataatgcattcttgtattatggtaaaa |
38951151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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