View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9643_low_3 (Length: 406)

Name: NF9643_low_3
Description: NF9643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9643_low_3
NF9643_low_3
[»] chr2 (3 HSPs)
chr2 (1-384)||(24454284-24454669)
chr2 (14-151)||(23348962-23349100)
chr2 (14-66)||(12741775-12741827)
[»] chr8 (6 HSPs)
chr8 (2-135)||(5662583-5662719)
chr8 (14-156)||(27541541-27541683)
chr8 (14-151)||(14678003-14678141)
chr8 (14-151)||(5657772-5657910)
chr8 (117-151)||(24788119-24788153)
chr8 (14-151)||(31100854-31100992)
[»] chr5 (5 HSPs)
chr5 (14-151)||(7473471-7473609)
chr5 (14-151)||(9043803-9043941)
chr5 (16-146)||(22004441-22004571)
chr5 (14-151)||(22009510-22009648)
chr5 (14-151)||(30442529-30442667)
[»] chr3 (9 HSPs)
chr3 (16-151)||(24761882-24762018)
chr3 (29-145)||(47763912-47764028)
chr3 (13-151)||(17681768-17681906)
chr3 (14-151)||(37982350-37982488)
chr3 (14-151)||(2549938-2550075)
chr3 (14-151)||(53973268-53973406)
chr3 (14-145)||(19882093-19882225)
chr3 (120-153)||(29861913-29861946)
chr3 (16-68)||(53027736-53027788)
[»] scaffold0096 (1 HSPs)
scaffold0096 (16-151)||(27411-27546)
[»] chr7 (3 HSPs)
chr7 (14-151)||(43071364-43071502)
chr7 (14-151)||(1262089-1262227)
chr7 (14-151)||(26909963-26910101)
[»] chr6 (2 HSPs)
chr6 (48-151)||(3065699-3065802)
chr6 (14-68)||(8976489-8976543)
[»] chr4 (2 HSPs)
chr4 (14-151)||(29863343-29863481)
chr4 (120-149)||(10195656-10195685)
[»] scaffold0596 (1 HSPs)
scaffold0596 (14-66)||(741-793)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 24454669 - 24454284
Alignment:
Q  1 ttgaaagtttgaa---agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcagg 97  Q
    |||||||||||||   |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |||    
T  24454669 ttgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgtttggcgcctaaaaaatttagg 24454570  T
Q  98 tttaagatttgcaatggtcttagcaatgttaattaggattagatataagtatgaagattgatgatagagacggaattatacaannnnnnnnnatttatca 197  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||| |||||||||||||         ||||||||    
T  24454569 tttaggatttgcaatggtcttagcaatgttaattaagattagatataagtatgaagtatgatgatagaggcggaattatacaatttttttt-atttatca 24454471  T
Q  198 gcataggtaaatttatatattgttaatggatatgagtgcaagaagcactacactnnnnnnntggaaacagcgcaagctctactaaacccattaagttgga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||  ||||||||||||||||||||||||||||    
T  24454470 gcataggtaaatttatatattgttaatggatatgagtgcaagaagcactacactaagaaaatggaaacagtacaagctctactaaacccattaagttgga 24454371  T
Q  298 agaccaaaaatagaaaaagttgagttgcctacaatgttacaccaaaggggcgaacaaaccaatcataaaagtgacaccgagtatcca 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24454370 agaccaaaaatagaaaaagttgagttgcctacaatgttacaccaaaggggcgaacaaaccaatcataaaagtgacactgagtatcca 24454284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 23348962 - 23349100
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||| ||||| ||| |||  ||| ||||||| | ||||||||    
T  23348962 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaat 23349061  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
        |||||||||||||  | ||||||||||||||||||    
T  23349062 ttcattagcaatgttaacaaagattagatataagtatga 23349100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 12741827 - 12741775
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacgg 66  Q
    |||||||||||||| |||||||| |||   ||| |||||||||||||||||||    
T  12741827 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 12741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 5662719 - 5662583
Alignment:
Q  2 tgaaagtttgaa---agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggt 98  Q
    ||||||||||||   |||||| ||||||| |||||||||||| | ||| ||||||||||||| ||||| |||||||| |||| |||||||||||  ||||    
T  5662719 tgaaagtttgaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggt 5662620  T
Q  99 ttaagatttgcaatggtcttagcaatgttaattagga 135  Q
    ||| | ||||||| |   |||||||| ||||||||||    
T  5662619 ttagggtttgcaaagtcattagcaatattaattagga 5662583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 27541541 - 27541683
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatg 113  Q
    |||||||||||||| |||||||| |||   ||| |||||||||||||||||||    |||||||||| ||| ||   ||| ||||||| | ||||||| |    
T  27541541 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttgtttggagccaaagccatttaggtttagggtttgcaaag 27541640  T
Q  114 gtcttagcaatgttaattaggattagatataagtatgaagatt 156  Q
       |||||||||||||  | |||||||||||||||||| ||||    
T  27541641 tcattagcaatgttaacaaagattagatataagtatgatgatt 27541683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 14678003 - 14678141
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||| ||||| ||| |||  ||| ||||||| | ||| |||     
T  14678003 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggttttcaaa 14678102  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
    |   |||||||||||||  | ||||||||||||||||||    
T  14678103 gtcattagcaatgttaacaaagattagatataagtatga 14678141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 5657910 - 5657772
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgttt-ggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   | | ||||||||||||||||||| |  |||||||| || ||| |||  ||| ||||||| | |||||||     
T  5657910 agattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactatttaggtttagggtttgcaaa 5657811  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
    |   ||||||| |||||  | ||||||||||||||||||    
T  5657810 gtcattagcaacgttaacaaagattagatataagtatga 5657772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 24788119 - 24788153
Alignment:
Q  117 ttagcaatgttaattaggattagatataagtatga 151  Q
    |||||||||||||||| ||||||||||||||||||    
T  24788119 ttagcaatgttaattaagattagatataagtatga 24788153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 31100854 - 31100992
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgttt-ggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||  |||   | | ||||||||||||| ||||| |  |||||||| || ||| |||  ||| ||||||| |||||||||     
T  31100854 agattagatcaaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctcccttgttttggagccaaaaccatttaggtttaggatttgcaaa 31100953  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
    |   |||||||||||||  | ||||||||||||||||||    
T  31100954 gtcattagcaatgttaacaaagattagatataagtatga 31100992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 7473471 - 7473609
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||||||||||||||||||||||| |  ||||| ||||| ||| |||  ||| ||||||| | ||||||||    
T  7473471 agattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaat 7473570  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
        |||||||||||||  | ||||||||||||||||||    
T  7473571 ttcattagcaatgttaacaaagattagatataagtatga 7473609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 9043941 - 9043803
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||| ||||| ||| |||  ||| ||||||| | ||||||||    
T  9043941 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaat 9043842  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
        |||||||||||||  | ||||||||||||||||||    
T  9043841 ttcattagcaatgttaacaaagattagatataagtatga 9043803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 22004441 - 22004571
Alignment:
Q  16 attagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggt 115  Q
    |||||||||||| |||| |||||||   ||| ||||||||||||||||||| || ||||| |||| |||||||  ||  ||||||| | |||||||        
T  22004441 attagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgattggcgcctaaactatctaggtttagggtttgcaaaatc 22004540  T
Q  116 cttagcaatgttaattaggattagatataag 146  Q
     |||||||||||||  | |||||||||||||    
T  22004541 attagcaatgttaacaaagattagatataag 22004571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 22009510 - 22009648
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||| ||||| ||| |||  ||| ||||||| | |||||||     
T  22009510 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaa 22009609  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
        |||||||||||||  | ||||||||||||||||||    
T  22009610 ttcattagcaatgttaacaaagattagatataagtatga 22009648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 30442529 - 30442667
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||| ||||| ||| |||  ||| ||||||| | ||||||||    
T  30442529 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaat 30442628  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
        |||||||||||||  | ||||||||||||| ||||    
T  30442629 ttcattagcaatgttaacaaagattagatataagcatga 30442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 24761882 - 24762018
Alignment:
Q  16 attagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaatgg 114  Q
    |||||||||||| |||||||| |||   ||| |||||||||||||||||||||  | ||| ||||| ||| |||  ||| ||||||| | ||||||| |     
T  24761882 attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttaggtttagggtttgcaaagt 24761981  T
Q  115 tcttagcaatgttaattaggattagatataagtatga 151  Q
      |||||||||||||  ||||||||||||||||||||    
T  24761982 cattagcaatgttaagaaggattagatataagtatga 24762018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 47763912 - 47764028
Alignment:
Q  29 atgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgtta 128  Q
    |||||||||||| | ||| | |||||  |||||||||| |||||||| |||| ||||||||| |  || |||| | ||||||| | | ||||||||||||    
T  47763912 atgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctagatttaggttttgcaaagttattagcaatgtta 47764011  T
Q  129 attaggattagatataa 145  Q
    | |||||||||||||||    
T  47764012 agtaggattagatataa 47764028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 17681906 - 17681768
Alignment:
Q  13 aagattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    ||||||||||||||| |||||||| |||   | | ||||||||||||||||||| || |||||||||| ||| |||  ||| ||||||| | |||||||     
T  17681906 aagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaa 17681807  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
        ||| |||||||||  | ||||||||||||||||||    
T  17681806 atcattaacaatgttaacaaagattagatataagtatga 17681768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 37982488 - 37982350
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    ||||||||| |||| |||||||| |||   ||| |||||||||||||||||||||  ||||| ||||| ||| |||  ||| ||||||| | ||||||||    
T  37982488 agattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaat 37982389  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
        |||||||||||||  | ||||||||||||||||||    
T  37982388 ttcattagcaatgttaacaaagattagatataagtatga 37982350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 2550075 - 2549938
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgttt-ggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||| ||||||| |||||||| |||   ||| ||||||| ||||||||||| |  |||||||| || ||| |||  ||| ||||||| | |||||||     
T  2550075 agattaaatcaaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgcaaa 2549977  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
    |   |||||||||||||||| ||||||||||||||||||    
T  2549976 gtcattagcaatgttaattaagattagatataagtatga 2549938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 53973268 - 53973406
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| | |   ||| ||||||||||||||||||| |  ||||| ||||| ||| |||  ||| ||||||| | ||||||||    
T  53973268 agattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgcaat 53973367  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
        |||||||||||||  | ||||||||||||||||||    
T  53973368 ttcattagcaatgttaacaaagattagatataagtatga 53973406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 19882093 - 19882225
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgttt-ggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| |||||||||||||||||||||  |||||||| || ||| |||  ||| ||||||| | ||| ||||    
T  19882093 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttacaat 19882192  T
Q  113 ggtcttagcaatgttaattaggattagatataa 145  Q
        |||||||||||||  | ||||||||||||    
T  19882193 ttcattagcaatgttaacaaagattagatataa 19882225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 29861913 - 29861946
Alignment:
Q  120 gcaatgttaattaggattagatataagtatgaag 153  Q
    ||||||||||||||||||||| ||||||||||||    
T  29861913 gcaatgttaattaggattagaaataagtatgaag 29861946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 53027736 - 53027788
Alignment:
Q  16 attagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtc 68  Q
    |||||||||||| |||||||| |||   ||| |||||||||||||||||||||    
T  53027736 attagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtc 53027788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 27546 - 27411
Alignment:
Q  16 attagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggt 115  Q
    |||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  |||||||||| ||| |||  ||| ||||||| | |||||||        
T  27546 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggtttgcaaaatc 27447  T
Q  116 cttagcaatgttaattaggattagatataagtatga 151  Q
     |||||||||||||  | ||||||||||||||||||    
T  27446 attagcaatgttaacaaagattagatataagtatga 27411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 43071364 - 43071502
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||| ||||| ||| |||  ||| ||||||| | ||||||||    
T  43071364 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaat 43071463  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
        |||||||||||||  | ||||||||||||||||||    
T  43071464 ttcattagcaatgttaacaaagattagatataagtatga 43071502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 1262227 - 1262089
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| |||||||||||||||||||    ||||| ||||| ||| |||  ||| ||||||| | |||||||     
T  1262227 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttttggagccaaaaccatttaggtttagggtttgcaaa 1262128  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
    |   |||||||||||||  | ||||||||||||||||||    
T  1262127 gtcattagcaatgttaacaaagattagatataagtatga 1262089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 26909963 - 26910101
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| ||||||| |||||||| ||||  ||||| ||||| ||| ||   ||| ||||||| | |||||||     
T  26909963 agattagatcaaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttttggagccaaatccatttaggtttagggtttgcaaa 26910062  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
    | | |||||||||||||  | ||||||||||||||||||    
T  26910063 gttattagcaatgttaacaaagattagatataagtatga 26910101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 3065802 - 3065699
Alignment:
Q  48 aaatgatgagatccaacggtcctccttgtttggtgcctaaaaaattcaggtttaagatttgcaatggtcttagcaatgttaattaggattagatataagt 147  Q
    |||||||||||||||||||||  |||||||||| ||| |||  ||| ||||||| | ||||||| |   ||||| |||||||  | ||||||||||||||    
T  3065802 aaatgatgagatccaacggtctcccttgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaaagattagatataagt 3065703  T
Q  148 atga 151  Q
    ||||    
T  3065702 atga 3065699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 8976543 - 8976489
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtc 68  Q
    |||||||||||||| |||||||| ||||  |||||||| ||||||||||||||||    
T  8976543 agattagatcaaaggatgagatgcatgtttagctaaataatgagatccaacggtc 8976489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 29863343 - 29863481
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacggtcctccttg-tttggtgcctaaaaaattcaggtttaagatttgcaat 112  Q
    |||||||||||||| |||||||| |||   ||| ||||||||||||||||||| |  ||||| ||||| ||| |||  ||| ||||||| | |||||||     
T  29863343 agattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttacggtttgcaaa 29863442  T
Q  113 ggtcttagcaatgttaattaggattagatataagtatga 151  Q
    |   | |||||||||||  | ||||||||||||||||||    
T  29863443 gtcatgagcaatgttaacaaagattagatataagtatga 29863481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 10195685 - 10195656
Alignment:
Q  120 gcaatgttaattaggattagatataagtat 149  Q
    ||||||||||||||||||||||||||||||    
T  10195685 gcaatgttaattaggattagatataagtat 10195656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 793 - 741
Alignment:
Q  14 agattagatcaaagaatgagatgaatgtcaagctaaatgatgagatccaacgg 66  Q
    |||||||||||||| |||||||| |||   ||| |||||||||||||||||||    
T  793 agattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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