View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9643_low_7 (Length: 314)
Name: NF9643_low_7
Description: NF9643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9643_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 13887913 - 13887616
Alignment:
| Q |
1 |
tgtattatcgaatgaatgaatctgttacaatgtacaagcacctatttataagctaatgagagtacattatatctatcatacactaactgcatagtaacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
13887913 |
tgtattatcgaatgaatgaatctgttacaatgtacaagcacctatttataagctaatgagagtacattatatccatcatacactaactaaatagtaacac |
13887814 |
T |
|
| Q |
101 |
aactcatctaactg-tcataacagaaatacagttggcatattcaagtttgttagggttttctcaagttacttgtatcacaagtaacttcttcttcctctt |
199 |
Q |
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||||| |||||||| ||||||||||||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13887813 |
aactcctctaactggtcataacagaaatacagctggcatgttgaagtttgttagggtttgctcaagttacttgtatcacaagtaacttcttcttcctctt |
13887714 |
T |
|
| Q |
200 |
tattttgtaacaacagtaaagacgaatgtcccggttaaaacaaattgatttctcaggattaaagaaacccaaaaagagcctctaaatctctggtttat |
297 |
Q |
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| T |
13887713 |
tattttgtaacaacagtaaagacgaatgtcccggttaaaacaaattgatttctcaggattaaagaaacccaaaaagagcctctaaatctctggtttat |
13887616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 13892569 - 13892359
Alignment:
| Q |
1 |
tgtattatcgaatgaatgaatctgttacaatgtacaagcacctatttataagctaatgagagtacattatatctatcatacactaactgcatagtaacac |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13892569 |
tgtattattgaatgaatgaatctgttacaatgtgcaagcacctatttataagctaatgagagtacattatatctatcatacactaactacatagtaacac |
13892470 |
T |
|
| Q |
101 |
aactcatctaactgtcataacagaaatacagttggcatattcaagtttgttagggttttctcaagttacttgtatcacaagtaacttcttcttcctcttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13892469 |
aactcatctaactgtcataacagaaatacagttggcatattgaagtttgttagggtttgctcaagttacttgtatcacaagtaagttcttcttcctcttt |
13892370 |
T |
|
| Q |
201 |
attttgtaaca |
211 |
Q |
| |
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||||||||||| |
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| T |
13892369 |
attttgtaaca |
13892359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 27816420 - 27816210
Alignment:
| Q |
1 |
tgtattatcgaatgaatgaatctgttacaatgtacaagcacctatttataagctaatgagagtacattatatctatcatacactaactgcatagtaacac |
100 |
Q |
| |
|
|||||||| || ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||| |
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| T |
27816420 |
tgtattattgattgaatgaattagttacaatgtgtaagcatctatttataagctaatgagagtacattatatcaatcatatactaactacatagtatcac |
27816321 |
T |
|
| Q |
101 |
aactcatctaactgtcataacagaaatacagttggcat-attcaagtttgttagggttttctcaagttacttgtatcacaagtaacttcttcttcctctt |
199 |
Q |
| |
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||||| ||||||||||| |||||||| |||| |||||| || |||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |
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| T |
27816320 |
aactcctctaactgtcacaacagaaa-acagctggcatgtttgaagtttgttagggtttgcttgagttacttgcatcacaagtaacttcttcttcctctt |
27816222 |
T |
|
| Q |
200 |
tattttgtaaca |
211 |
Q |
| |
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|||||||||||| |
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| T |
27816221 |
tattttgtaaca |
27816210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 12147358 - 12147438
Alignment:
| Q |
5 |
ttatcgaatgaatgaatctgttacaatgtacaagcacctatttataagctaatgagagtacattatatctatcatacacta |
85 |
Q |
| |
|
|||| |||||||||| | |||||||||| || | || ||||||||||||| |||| ||||||| || |||||||| |||| |
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| T |
12147358 |
ttattgaatgaatgagtttgttacaatgagcatgtacttatttataagctattgagtgtacattgtagctatcatatacta |
12147438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 15094893 - 15094696
Alignment:
| Q |
14 |
gaatgaatctgttacaatgtacaagcacctatttataagctaatgagagtacattatatctatcatacactaactgcatagtaacacaactcatctaact |
113 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||| || |||| ||| | | ||||||| |
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| T |
15094893 |
gaatgaatgggttacaatgtgtaagcacttatttataagctaatgaaggtacattatatctatcataagctaactacacagtagcactattactctaact |
15094794 |
T |
|
| Q |
114 |
gtcataacagaaatacagttggcatattcaagtttgttagggttttctcaagttacttgtatcacaagtaacttcttcttcctctttattttgtaacaa |
212 |
Q |
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|||| ||||||| ||||||||||||| | |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
15094793 |
gtca-aacagaattacagttggcatagtaaagtttgttagggtttgctcaagttacttgcatcgcaagtaacttcttcttcctctttattttgtaacaa |
15094696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 18291879 - 18291734
Alignment:
| Q |
64 |
acattatatctatcatacactaactgcatagtaacacaa-ctcatctaactgtcataacagaaatacagttggcatattcaagtttgttagggttttctc |
162 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||| | || ||||||||||| ||||||||||||| |||| || | ||||||||||||||| ||| |
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| T |
18291879 |
acattatatctatcataagctaactacacagtaacactatctactctaactgtcacaacagaaatacagctggcctagtacagtttgttagggtttgctc |
18291780 |
T |
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| Q |
163 |
aagttacttgtatcacaagtaacttcttcttcctctttattttgtaaca |
211 |
Q |
| |
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|||||||||| ||||||||||||||| ||| |||||||||||||||| |
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| T |
18291779 |
aagttacttgcatcacaagtaacttcatct---tctttattttgtaaca |
18291734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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