View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9644_1 (Length: 660)
Name: NF9644_1
Description: NF9644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9644_1 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 183 - 631
Target Start/End: Original strand, 42929751 - 42930199
Alignment:
| Q |
183 |
atagcactcgttgtgtttcttgttcggaagctcgcgaggaagaggttgatactcctagttcttctttgttgttagaacaagttagggaggagattgattg |
282 |
Q |
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| T |
42929751 |
atagcactcgttgtgtttcttgttcggaagctcgcgaggaagaggttgatactcctagttcttctttgttgttagaacaagttagggaggagattgattg |
42929850 |
T |
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| Q |
283 |
cgaagatgaagttgaagcttcacaaactcaagcttcaacttcatcttcgtcttcaagtacttaatttaaggttgaggggaatgattttaattatgtatac |
382 |
Q |
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| T |
42929851 |
tgaagatgaagttgaagcttcacaaactcaagcttcaacttcatcttcgtcttcaagtacttaatttaaggttgaggggaatgattttaattatgtatac |
42929950 |
T |
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| Q |
383 |
caaatattagtagtagtgtatcataaagtaacattttttgtttcattatttttcatgttaatttccctcttttgcttacgtatttggttctttgcgctga |
482 |
Q |
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| T |
42929951 |
caaatagtagtagtagtgtatcataaagtaacattttttgtttcattatttttcatgttaatttccctcttttgcttacgtatttggttctttgcgctga |
42930050 |
T |
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| Q |
483 |
gagattcttcacattcacatagttgaatgatattttgaatattaaaatcaaaagtatagtctacatctgtttcaagattgtctgatcttgattgaatgac |
582 |
Q |
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| T |
42930051 |
cagattcttcacattcacatagttgaatgatattttgaatattaaaatcaaaagtatagtttacatctgtttcaagattatctgatcttgactgaatgac |
42930150 |
T |
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| Q |
583 |
catcgatgtctagactcttgactacctgagcgcgaatcttcttttagac |
631 |
Q |
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| T |
42930151 |
catcgatatctagactcttggctacctgagtgcgaatcctcttttagac |
42930199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 42929601 - 42929658
Alignment:
| Q |
26 |
atcatggctatattgttggtgcttttgttgatttattggttggtcttacatttgcttc |
83 |
Q |
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| T |
42929601 |
atcatggctatattgttggtgcttttgttgatttattggttggtcttacatttgcttc |
42929658 |
T |
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