View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9644_low_1 (Length: 361)
Name: NF9644_low_1
Description: NF9644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9644_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 5 - 347
Target Start/End: Complemental strand, 25522518 - 25522176
Alignment:
| Q |
5 |
agtttggtgttggaaagatcaagataatccaaattcgggaattttccttgcaatttgggaaatttgatcaaatttacggaagacagttccaattcttcaa |
104 |
Q |
| |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25522518 |
agtttgttattggaaagatcaagataatccaaattcgggaattttccttgcaatttgggaaatttgatcaaatttacggaagacagttccaattcgtcaa |
25522419 |
T |
|
| Q |
105 |
ggtaaaaaacactatgattgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25522418 |
ggtaaaaaacactatgattgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtg |
25522319 |
T |
|
| Q |
205 |
ttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgccttgtagcttg |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25522318 |
ttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgccttgtagcttg |
25522219 |
T |
|
| Q |
305 |
ttgttgtatagatttaaactctctaaggaatatgatgaggttg |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25522218 |
ttgttgtatagatttaaactctctaaggaatatgatgaggttg |
25522176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 65 - 310
Target Start/End: Original strand, 42124167 - 42124412
Alignment:
| Q |
65 |
aatttgatcaaatttacggaagacagttccaattcttcaaggtaaaaaacactatgattgacattggattcgaagtttagtgacaattgagtattccatg |
164 |
Q |
| |
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|||||||||||||| || ||||||| ||||||| ||| ||| | ||| ||||| ||||||||||||||| || ||||| || |||||| ||||||||| |
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| T |
42124167 |
aatttgatcaaattgacagaagacaattccaatacttgtaggctagaaaaactataattgacattggattcaaaatttagagataattgactattccatg |
42124266 |
T |
|
| Q |
165 |
aaagggataaaaatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgt |
264 |
Q |
| |
|
|||||||||| | | ||| |||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||||||||| | || ||| ||||| |
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| T |
42124267 |
aaagggataacatttctagacatgtaagtttggagaagagttgaaaattgacaagaccactcaagtcgttcgaagatagaattaagtgagatagttttgt |
42124366 |
T |
|
| Q |
265 |
aagattgaaaatggattctggaatattgccttgtagcttgttgttg |
310 |
Q |
| |
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|| ||||||||||| || |||||||||||||||||| |||||||| |
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| T |
42124367 |
taggttgaaaatggactcaggaatattgccttgtagcctgttgttg |
42124412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 343
Target Start/End: Complemental strand, 41712931 - 41712709
Alignment:
| Q |
121 |
attgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaa |
220 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| |||| ||||||||| | | || |||||| ||||| ||| |||| |||||||| |||| | |
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| T |
41712931 |
attgacaatggattcaaagtttagtgacaattgattattaagtgaaagggacagagatactagattttgaagttcggagaagtattgaaaatcaacaaca |
41712832 |
T |
|
| Q |
221 |
ccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgccttgtagcttgttgttgtatagattta |
320 |
Q |
| |
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||||| |||| |||| | ||||| ||| ||||||||||| |||| |||||||| ||||||||||||||||||| ||| |||||| | |||||| || |
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| T |
41712831 |
ccactgaagttgtttgatgataggtctagtctagttaggtttataagtttgaaaattgattctggaatattgccttctagtttgttgccgaatagatata |
41712732 |
T |
|
| Q |
321 |
aactctctaaggaatatgatgag |
343 |
Q |
| |
|
||||||||||||||||||| |
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| T |
41712731 |
gctcctctaaggaatatgatgag |
41712709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 343
Target Start/End: Complemental strand, 34239868 - 34239715
Alignment:
| Q |
190 |
aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata |
289 |
Q |
| |
|
|||||| | ||||| |||||||||||||| ||||||||||| |||| | |||||| ||| || ||||||||| ||| |||||||| || | ||||||| |
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|
| T |
34239868 |
aagttttgtaaagtcttgaaaattgacaacaccactcaagttgtttgatgatagacatagtgtaattaggtttgcaaggttgaaaattgaatttggaata |
34239769 |
T |
|
| Q |
290 |
ttgccttgtagcttgttgttgtatagatttaaactctctaaggaatatgatgag |
343 |
Q |
| |
|
| |||||||||||||||||| ||||| || | ||||||||||||||||||| |
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|
| T |
34239768 |
tcaccttgtagcttgttgttgcatagagatagatactctaaggaatatgatgag |
34239715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 306
Target Start/End: Complemental strand, 34232183 - 34232000
Alignment:
| Q |
123 |
tgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaa-aatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaac |
221 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||| |||||| ||||||||| ||| ||| || |||| ||||||| |||||||||||||||||||| || |
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|
| T |
34232183 |
tgacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaatacaaattttg-aagtttgccaaagtgttgaaaattgacaacac |
34232085 |
T |
|
| Q |
222 |
cactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgccttgtagcttgtt |
306 |
Q |
| |
|
||||||||| |||| | |||||| || || || ||| ||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34232084 |
cactcaagttgtttgatgatagatctaatacagctaaatttacaaggttgaaaattgattctggaatattgccttgtagcttgtt |
34232000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 41571321 - 41571191
Alignment:
| Q |
190 |
aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata |
289 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||||||| |||| | || || ||| ||||||||||| ||| |||||||| ||||| |||||| |
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|
| T |
41571321 |
aagtttggaaaagtatttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaaatagattcaggaata |
41571222 |
T |
|
| Q |
290 |
ttgccttgtagcttgttgttgtatagattta |
320 |
Q |
| |
|
| |||||||||||||||| || |||| |||| |
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|
| T |
41571221 |
tcgccttgtagcttgttgctgcatagtttta |
41571191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 42129667 - 42129784
Alignment:
| Q |
190 |
aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata |
289 |
Q |
| |
|
||||||||||||||||||||||| | || | ||||||||| |||| | |||||| ||| ||||| ||||| ||| |||||||| |||| ||||||| |
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|
| T |
42129667 |
aagtttggaaaagtgttgaaaatcaataacatcactcaagttgtttgatgatagatctagcaaagttaagtttgcaaggttgaaaatagattttggaata |
42129766 |
T |
|
| Q |
290 |
ttgccttgtagcttgttg |
307 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
42129767 |
ttgccttgtagcttgttg |
42129784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 41432337 - 41432450
Alignment:
| Q |
197 |
gaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgcctt |
296 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||| |||||||| | ||||| |||||| ||| ||||||| |||||||||||||| |||| |
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|
| T |
41432337 |
gaaaagagtttaaaattgacaaaaccactcaagttatttgaagatagacacaagttagtaaggtttacaaggttgaaaagtgattctggaatatttcctt |
41432436 |
T |
|
| Q |
297 |
gtagcttgttgttg |
310 |
Q |
| |
|
||| | |||||||| |
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|
| T |
41432437 |
gtaacatgttgttg |
41432450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 32681419 - 32681314
Alignment:
| Q |
123 |
tgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaacc |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||| | |||| |||||||||||| ||| ||||||||||||||| ||| |
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|
| T |
32681419 |
tgacattggattcaaagtttagtgacaattgactattccatgaaagagatagaaagtggagatgtgtaagtttggagaagagttgaaaattgacaagacc |
32681320 |
T |
|
| Q |
223 |
actcaa |
228 |
Q |
| |
|
|||||| |
|
|
| T |
32681319 |
actcaa |
32681314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 12249266 - 12249382
Alignment:
| Q |
190 |
aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata |
289 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||||||||| |||| | |||| | ||| |||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
12249266 |
aagtttggaaaagagttgaaaatcaacaacaccactcaagttgtttgatgataaatctagtctagttagggttgtaaggttgaaaatggattttggaata |
12249365 |
T |
|
| Q |
290 |
ttgccttgtagcttgtt |
306 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12249366 |
ttgccttgtagcttgtt |
12249382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 32681250 - 32681218
Alignment:
| Q |
278 |
gattctggaatattgccttgtagcttgttgttg |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
32681250 |
gattctgaaatattgccttgtagcttgttgttg |
32681218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 343
Target Start/End: Original strand, 8523826 - 8523975
Alignment:
| Q |
194 |
ttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgc |
293 |
Q |
| |
|
||||||| || ||| |||||||||| ||||||||||| |||| | |||||| ||| || ||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
8523826 |
ttggaaatgttttggaaattgacaacaccactcaagttgtttgatgatagatctagtctacttaggtttgcaaggttgaaaatggattctggaatattgc |
8523925 |
T |
|
| Q |
294 |
cttgtagcttgttgttgtatagatttaaactctctaaggaatatgatgag |
343 |
Q |
| |
|
|||||||| ||||||| |||| || | ||||||||||||||||||| |
|
|
| T |
8523926 |
cttgtagcctgttgttacttagagatagaaactctaaggaatatgatgag |
8523975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 123 - 310
Target Start/End: Original strand, 11118864 - 11119051
Alignment:
| Q |
123 |
tgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaacc |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||| |||||||||||||| | || | | || |||||| ||| ||| ||||||||||| ||| |
|
|
| T |
11118864 |
tgacattggattcgaattttagtgacaactgactattccttgaaagggataaaatttccaggtcagcaaatttggagaagagtttaaaattgacaacacc |
11118963 |
T |
|
| Q |
223 |
actcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgccttgtagcttgttgttg |
310 |
Q |
| |
|
|||||||| |||| | |||||| ||| | | ||| ||||| || |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
11118964 |
actcaagttgtttgatgatagatctagttcatctagctttgttaggctgaaaatgcattctggaatattgccttgtagccggttgttg |
11119051 |
T |
|
Back To:
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