View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9645_low_2 (Length: 329)
Name: NF9645_low_2
Description: NF9645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9645_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 42243313 - 42243616
Alignment:
| Q |
1 |
attgtcattcaactaatgatatcatggcagatgaaatatttaggttggattgtcaactaatgttacatacaaaattggcaaaaggcaggaattgatattt |
100 |
Q |
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| T |
42243313 |
attgtcattcaactaatgatatcatggcagatgaaatatttaggttggattgtcaactaatgttacatacaaaattggcaaaaggcaggaattgatattt |
42243412 |
T |
|
| Q |
101 |
ctgtttggatctactgatatgtatctgttacaaccacaaattcaaatcatttaaacacacatgtaaaattacacattatttaattagttcaatagtgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42243413 |
ctgtttggatctactgatatgtatctgttacaaccacaaattcaaatcatttaaacacacatgtaaaattacacattatttaattagttcaatagtgaaa |
42243512 |
T |
|
| Q |
201 |
aaatttgactattcatttcgaacnnnnnnnncttctcttctatttgtggtttgtaattacacaagttttgctcatataagcatcttaaaccacactagct |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42243513 |
aaatttgactattcatttcgaacttttttt--ttctcttctatttgtggtttgtgattacacaagttttgctcatataagcatcttaaaccacactagct |
42243610 |
T |
|
| Q |
301 |
tccatt |
306 |
Q |
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|||||| |
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| T |
42243611 |
tccatt |
42243616 |
T |
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