View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9645_low_7 (Length: 229)
Name: NF9645_low_7
Description: NF9645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9645_low_7 |
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| [»] scaffold0764 (1 HSPs) |
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| [»] scaffold0313 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 20955962 - 20955914
Alignment:
| Q |
173 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatc |
221 |
Q |
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| T |
20955962 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatc |
20955914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 20956124 - 20956080
Alignment:
| Q |
11 |
cagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
55 |
Q |
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| T |
20956124 |
cagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
20956080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 27162226 - 27162274
Alignment:
| Q |
173 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatc |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27162226 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatc |
27162274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27162054 - 27162108
Alignment:
| Q |
1 |
tcagcaacatcagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
55 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27162054 |
tcagcagcagcagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
27162108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1976815 - 1976869
Alignment:
| Q |
1 |
tcagcaacatcagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
55 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1976815 |
tcagcagcagcagttgagtcaacattctgaagttcctcttcagaaattgcagcaa |
1976869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 1984189 - 1984235
Alignment:
| Q |
9 |
atcagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
55 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1984189 |
atcagttgagtcaacattctgaagttcctcttcagaaattgcagcaa |
1984235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 1976990 - 1977038
Alignment:
| Q |
173 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatc |
221 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
1976990 |
gatcttctgcattttgttgcaggatttcctttgcattttcagcaatatc |
1977038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 1984356 - 1984404
Alignment:
| Q |
173 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatc |
221 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
1984356 |
gatcttctgcattttgttgcaggatttcctttgcattttcagcaatatc |
1984404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2939 - 2986
Alignment:
| Q |
1 |
tcagcaacatcagttgagtcaacattctgaagttcctcttcagagatt |
48 |
Q |
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||||||||| ||||||||||||| |||||||| |||| |||||||||| |
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| T |
2939 |
tcagcaacaccagttgagtcaactttctgaaggtccttttcagagatt |
2986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3676 - 3629
Alignment:
| Q |
1 |
tcagcaacatcagttgagtcaacattctgaagttcctcttcagagatt |
48 |
Q |
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||||||||| ||||||||||||| |||||||| |||| |||||||||| |
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| T |
3676 |
tcagcaacaccagttgagtcaactttctgaaggtccttttcagagatt |
3629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17833 - 17786
Alignment:
| Q |
1 |
tcagcaacatcagttgagtcaacattctgaagttcctcttcagagatt |
48 |
Q |
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||||||||| ||||||||||||| |||||||| |||| |||||||||| |
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| T |
17833 |
tcagcaacaccagttgagtcaactttctgaaggtccttttcagagatt |
17786 |
T |
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