View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9645_low_8 (Length: 220)
Name: NF9645_low_8
Description: NF9645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9645_low_8 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0764 (1 HSPs) |
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| [»] scaffold0313 (2 HSPs) |
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| [»] scaffold1531 (1 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1977290 - 1977061
Alignment:
| Q |
1 |
ctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1977290 |
ctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
1977191 |
T |
|
| Q |
101 |
caagtaagaagag----------aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat |
190 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1977190 |
caagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat |
1977091 |
T |
|
| Q |
191 |
ggctgattccccaccaaaggatggtgaacc |
220 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
1977090 |
ggctgattccccaccaaaggatggtgaacc |
1977061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1984656 - 1984427
Alignment:
| Q |
1 |
ctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1984656 |
ctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
1984557 |
T |
|
| Q |
101 |
caagtaagaagag----------aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat |
190 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1984556 |
caagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat |
1984457 |
T |
|
| Q |
191 |
ggctgattccccaccaaaggatggtgaacc |
220 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
1984456 |
ggctgattccccaccaaaggatggtgaacc |
1984427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27162526 - 27162297
Alignment:
| Q |
1 |
ctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27162526 |
ctagctcaactccacataaccacctccagcatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
27162427 |
T |
|
| Q |
101 |
caagtaagaagag----------aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat |
190 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27162426 |
caagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaagaagagtctgatgatgaaat |
27162327 |
T |
|
| Q |
191 |
ggctgattccccaccaaaggatggtgaacc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
27162326 |
ggctgattccccaccaaaggatggtgaacc |
27162297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 22911269 - 22911160
Alignment:
| Q |
4 |
gctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagccaa |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| || |||||||||||||||| ||| |
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| T |
22911269 |
gctcaacttcacataaccacctccaacatgcctactcctgtgtcctcacaaacaactagctatgtcaagagacacttagctcagaatgttaagaagacaa |
22911170 |
T |
|
| Q |
104 |
gtaagaagag |
113 |
Q |
| |
|
|||||||||| |
|
|
| T |
22911169 |
gtaagaagag |
22911160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 20955662 - 20955889
Alignment:
| Q |
1 |
ctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20955662 |
ctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
20955761 |
T |
|
| Q |
101 |
caagtaagaa----------gagaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat |
190 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
20955762 |
caagtaagaagagaaagcttgagaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactcttctgaaaaagaagagtctgatgatgaaat |
20955861 |
T |
|
| Q |
191 |
ggctgattccccaccaaaggatggtgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
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| T |
20955862 |
ggctgattccccaccaaaggatggtgaa |
20955889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3405 - 3176
Alignment:
| Q |
1 |
ctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
3405 |
ctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacactcagctcagaatgttaagaagc |
3306 |
T |
|
| Q |
101 |
caagtaagaagag----------aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat |
190 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||| || || |
|
|
| T |
3305 |
caagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatctgatgaagagat |
3206 |
T |
|
| Q |
191 |
ggctgattccccaccaaaggatggtgaacc |
220 |
Q |
| |
|
|||||||||||||||||||| | |||||| |
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|
| T |
3205 |
agctgattccccaccaaaggaggatgaacc |
3176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 3210 - 3439
Alignment:
| Q |
1 |
ctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3210 |
ctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacactcagctcagaatgttaagaagc |
3309 |
T |
|
| Q |
101 |
caagtaagaagag----------aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat |
190 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||| || || |
|
|
| T |
3310 |
caagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatctgatgaagagat |
3409 |
T |
|
| Q |
191 |
ggctgattccccaccaaaggatggtgaacc |
220 |
Q |
| |
|
|||||||||||||||||||| | |||||| |
|
|
| T |
3410 |
agctgattccccaccaaaggaggatgaacc |
3439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 17367 - 17596
Alignment:
| Q |
1 |
ctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17367 |
ctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacactcagctcagaatgttaagaagc |
17466 |
T |
|
| Q |
101 |
caagtaagaagag----------aaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat |
190 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||| || || |
|
|
| T |
17467 |
caagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatctgatgaagagat |
17566 |
T |
|
| Q |
191 |
ggctgattccccaccaaaggatggtgaacc |
220 |
Q |
| |
|
|||||||||||||||||||| | |||||| |
|
|
| T |
17567 |
agctgattccccaccaaaggaggatgaacc |
17596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1531 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1531
Description:
Target: scaffold1531; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 978 - 1087
Alignment:
| Q |
4 |
gctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagccaa |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| ||||||||| |||||| ||| |
|
|
| T |
978 |
gctcaacttaacataaccacctccaacatgcctacccctgtgtcttctcaaacaactagctctttcaagagacactcagctcagaatgtcaagaagtcaa |
1077 |
T |
|
| Q |
104 |
gtaagaagag |
113 |
Q |
| |
|
||||||||| |
|
|
| T |
1078 |
ataagaagag |
1087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 43159 - 43053
Alignment:
| Q |
4 |
gctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagccaa |
103 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| ||| |||| || ||||| ||||| |||| |||||||||| ||||| | |||||||| || |
|
|
| T |
43159 |
gctcaacttcacataaccaccaccaacatgcctactcatgtatcctgagaagcaactggctctatcaagagacactcagaacagaaggataagaagctaa |
43060 |
T |
|
| Q |
104 |
gtaagaa |
110 |
Q |
| |
|
| ||||| |
|
|
| T |
43059 |
ggaagaa |
43053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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