View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9646_high_1 (Length: 425)

Name: NF9646_high_1
Description: NF9646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9646_high_1
NF9646_high_1
[»] chr1 (14 HSPs)
chr1 (1-422)||(28485641-28486091)
chr1 (136-270)||(46090135-46090277)
chr1 (1-64)||(46090350-46090413)
chr1 (140-210)||(43193814-43193884)
chr1 (228-270)||(3872137-3872179)
chr1 (224-270)||(11435350-11435396)
chr1 (168-210)||(16313970-16314012)
chr1 (138-184)||(28486378-28486424)
chr1 (140-210)||(43781959-43782029)
chr1 (217-271)||(46923664-46923718)
chr1 (169-210)||(1181497-1181538)
chr1 (137-178)||(11434753-11434794)
chr1 (226-274)||(28539432-28539479)
chr1 (140-208)||(28539506-28539574)
[»] chr3 (11 HSPs)
chr3 (109-210)||(7789886-7789987)
chr3 (103-210)||(51170992-51171099)
chr3 (1-271)||(25226739-25227015)
chr3 (148-210)||(46183006-46183068)
chr3 (207-269)||(51147359-51147421)
chr3 (217-270)||(25227385-25227438)
chr3 (163-210)||(20513517-20513564)
chr3 (167-210)||(51815141-51815184)
chr3 (135-184)||(25227326-25227375)
chr3 (231-271)||(6778736-6778776)
chr3 (170-210)||(53630307-53630347)
[»] chr4 (19 HSPs)
chr4 (103-271)||(11660980-11661157)
chr4 (137-210)||(39834084-39834157)
chr4 (151-210)||(11660827-11660886)
chr4 (212-270)||(39834793-39834851)
chr4 (208-272)||(20394189-20394253)
chr4 (136-184)||(23266736-23266784)
chr4 (139-210)||(21283802-21283873)
chr4 (104-184)||(20394109-20394188)
chr4 (22-64)||(39834228-39834270)
chr4 (217-270)||(23266794-23266847)
chr4 (224-272)||(40361781-40361829)
chr4 (217-272)||(21713311-21713366)
chr4 (217-270)||(39834014-39834068)
chr4 (217-270)||(31825875-31825928)
chr4 (149-210)||(45864934-45864995)
chr4 (149-210)||(54185590-54185651)
chr4 (208-272)||(23266178-23266242)
chr4 (152-184)||(23266243-23266275)
chr4 (154-210)||(42040460-42040516)
[»] scaffold0012 (1 HSPs)
scaffold0012 (137-263)||(36235-36370)
[»] chr6 (8 HSPs)
chr6 (103-211)||(32879620-32879728)
chr6 (224-272)||(5741556-5741604)
chr6 (139-210)||(9929598-9929669)
chr6 (144-210)||(4410213-4410279)
chr6 (168-210)||(35018741-35018783)
chr6 (169-210)||(7527068-7527109)
chr6 (170-210)||(7919335-7919375)
chr6 (138-178)||(32879699-32879739)
[»] chr8 (8 HSPs)
chr8 (136-210)||(3194546-3194620)
chr8 (4-57)||(3194420-3194473)
chr8 (143-210)||(24994550-24994617)
chr8 (224-272)||(2784955-2785003)
chr8 (139-210)||(14097516-14097587)
chr8 (227-270)||(20669856-20669899)
chr8 (168-210)||(39047289-39047331)
chr8 (137-182)||(3194077-3194122)
[»] chr5 (6 HSPs)
chr5 (1-270)||(43275515-43275788)
chr5 (223-270)||(25868011-25868058)
chr5 (224-274)||(7634107-7634157)
chr5 (149-210)||(40018113-40018174)
chr5 (168-210)||(29195267-29195309)
chr5 (137-178)||(17854731-17854772)
[»] chr2 (6 HSPs)
chr2 (139-210)||(6401766-6401837)
chr2 (139-210)||(187231-187302)
chr2 (139-210)||(31116229-31116300)
chr2 (168-210)||(19380221-19380263)
chr2 (224-270)||(42882455-42882501)
chr2 (138-178)||(33710901-33710941)
[»] chr7 (9 HSPs)
chr7 (148-210)||(432913-432975)
chr7 (154-210)||(31877428-31877484)
chr7 (139-210)||(12629787-12629858)
chr7 (139-210)||(24504131-24504202)
chr7 (226-271)||(47442270-47442315)
chr7 (168-270)||(23245940-23246051)
chr7 (154-210)||(36653281-36653337)
chr7 (217-267)||(30859755-30859805)
chr7 (166-210)||(30665642-30665686)
[»] scaffold0001 (1 HSPs)
scaffold0001 (137-210)||(185444-185517)
[»] scaffold0010 (1 HSPs)
scaffold0010 (166-210)||(28607-28651)
[»] scaffold0408 (1 HSPs)
scaffold0408 (139-210)||(7859-7930)
[»] scaffold0015 (1 HSPs)
scaffold0015 (169-210)||(33592-33633)
[»] scaffold0190 (1 HSPs)
scaffold0190 (139-171)||(13604-13636)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 28486091 - 28485641
Alignment:
Q  1 aagtgttggactgataataacagtttaatgtatccaggctgtgtatgtataactatgtatgcatataagcaaattcttgaatatatgcatgtgattgaaa 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28486091 aagtgttggactgataataatagtttaatgtatccaggctgtgtatgtataactatgtatgcatataagcaaattcttgaatatatgcatgtgattgaaa 28485992  T
Q  101 ctagcgtgagttaactcacgcaagtgtnnnnnnncggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttg 200  Q
    |||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  28485991 ctagcgcgagttaactcacgcaagtgtaaaaaaatggtttttacacgtgcgtgacttaagtcacgctgcattagttaagtaacgcataattttacacttg 28485892  T
Q  201 cgttagttaa---------gagcaattttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattcttctaactatgaatccttgac 291  Q
    | ||||||||         ||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  28485891 cattagttaactaacgtaagagcatttttgggatggctgcaggtcgcgagcgaaaagtgcagggggaagagcagaattcttctaactatgaatccttgac 28485792  T
Q  292 catcctttcgtggcccaacaa--------------------ttctggtatacnnnnnnnntctttgtttctgatgagagatttcagaaatcacacatgat 371  Q
    |||||||||||||||||||||                    |||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  28485791 catcctttcgtggcccaacaattctggtcgtggcccaacaattctggtatacaaaaaaaatctttgtttctgatgagagatttcagaaatcacacatgat 28485692  T
Q  372 aaatttctgttcctaaacatacaagaaaataatgtgctcaaatttgcctat 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28485691 aaatttctgttcctaaacatacaagaaaataatgtgctcaaatttgcctat 28485641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 46090277 - 46090135
Alignment:
Q  136 ggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagt---------taagagcaattttgggatg 226  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||         ||||   | ||||||||||    
T  46090277 ggtttttacacgtgcgtgactta-gtcacgctgcgttagttaagtaacacataattttacacttgtgttagttaattaacataaggatatttttgggatg 46090179  T
Q  227 gctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    |||||||| |||||| | |||||||||| |||||||||||||||    
T  46090178 gctgcaggacgcgagcgaaaagtgcaggaggaagagcagaattc 46090135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 46090413 - 46090350
Alignment:
Q  1 aagtgttggactgataataacagtttaatgtatccaggctgtgtatgtataactatgtatgcat 64  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  46090413 aagtgttggaatgataataatagtttaatgtatccaggttgtgtatgtataactatgtatgcat 46090350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 43193884 - 43193814
Alignment:
Q  140 tttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||| | |||| ||||||||    
T  43193884 tttacacttgcgtgacttaagtcacgctgcgttaattaaataacgcataattttatatttgcattagttaa 43193814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 3872179 - 3872137
Alignment:
Q  228 ctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  3872179 ctgcagggcgcgagcgaaaagtgcagggggaagagcagaattc 3872137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 11435350 - 11435396
Alignment:
Q  224 atggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  11435350 atggttgcagggcgcgagtgaaaagtgcagggtgaagagcagaattc 11435396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 16314012 - 16313970
Alignment:
Q  168 gcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||    
T  16314012 gcgttagttaactaacgcatagtttttcacttgcgttagttaa 16313970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 28486378 - 28486424
Alignment:
Q  138 tttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacg 184  Q
    |||||||| |||||||||||||||||  ||||| |||||||||||||    
T  28486378 tttttacaggtgcgtgacttaagtcaagctgcgctagttaagtaacg 28486424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 43782029 - 43781959
Alignment:
Q  140 tttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||| ||| ||||||||||||  | |||||| |||| |||| ||||||||||||| |||||| |||||    
T  43782029 tttacacttgcatgacttaagtcatgccgcgttatttaactaacacataattttacacatgcgtttgttaa 43781959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 46923718 - 46923664
Alignment:
Q  217 ttttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattct 271  Q
    |||||| ||||||||||||||||||   || |||||||| |||||||||||||||    
T  46923718 ttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagcagaattct 46923664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 1181497 - 1181538
Alignment:
Q  169 cgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||||| ||||||||| |||| ||||||||||||||||    
T  1181497 cgttagttaactaacgcatagtttttcacttgcgttagttaa 1181538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 11434753 - 11434794
Alignment:
Q  137 gtttttacacgtgcgtgacttaagtcacactgcgttagttaa 178  Q
    |||||||||| ||| |||||||||||||||||||| ||||||    
T  11434753 gtttttacacatgcctgacttaagtcacactgcgtgagttaa 11434794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 28539479 - 28539432
Alignment:
Q  226 ggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattcttct 274  Q
    |||||||||||||||| | |||||||| ||||||||||| |||||||||    
T  28539479 ggctgcagggcgcgagcgaaaagtgca-ggggaagagcaaaattcttct 28539432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 28539574 - 28539506
Alignment:
Q  140 tttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagtt 208  Q
    ||||||| ||||| ||||||||  | |  |||||||||| |||||||| | ||||||||||||||||||    
T  28539574 tttacacatgcgttacttaagtagcgcaacgttagttaactaacgcattaatttacacttgcgttagtt 28539506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 7789886 - 7789987
Alignment:
Q  109 agttaactcacgcaagtgtnnnnnnncggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagtt 208  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7789886 agttaactcacgcaagtgtaaataaacggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacctgcgttagtt 7789985  T
Q  209 aa 210  Q
    ||    
T  7789986 aa 7789987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 51171099 - 51170992
Alignment:
Q  103 agcgtgagttaactcacgcaagtgtnnnnnnncggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcg 202  Q
    ||||||| |||| ||||||||||||       ||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||     
T  51171099 agcgtgacttaagtcacgcaagtgtaaaaaagcggtttttacacgtgcgtgacttaagttacgttacgttagttaagtaacgcataattttacacttgca 51171000  T
Q  203 ttagttaa 210  Q
    ||||||||    
T  51170999 ttagttaa 51170992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 25227015 - 25226739
Alignment:
Q  1 aagtgttggactgataataacagtttaatgtatccaggctgtgtatgtataactatgtatgcatataagcaaattcttgaatatatgcatgtgattgaaa 100  Q
    |||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| | |   |  ||||  |  | || |  |  | ||||    
T  25227015 aagtgttggaatgataataatagtttaatgtatctaggttgtgtatgtataactatgtatgcatgtgattca--tctttcacgtttgaaaat--tggaaa 25226920  T
Q  101 ctagcgtgagttaactcacgcaagtgtnnnnnnncggtttttacacgtgcgtgacttaagtcacactgcgtt-agttaagtaacgcataattttacactt 199  Q
     ||||||||||||||||| ||||| ||       ||||||||||||||| ||||||||| | || ||| ||| |||||||||||| ||||||||||||||    
T  25226919 ttagcgtgagttaactcatgcaagagtaaaaaaacggtttttacacgtgtgtgacttaaattacgctgtgtttagttaagtaacgtataattttacactt 25226820  T
Q  200 gcgttagt---------taagagcaattttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattct 271  Q
    ||||||||         ||||| || ||| ||||||||||||||||| ||| |  ||||||||||||||||||| ||||||    
T  25226819 gcgttagttaactaacgtaagaacattttcgggatggctgcagggcgtgagcgacaagtgcagggggaagagcataattct 25226739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 46183068 - 46183006
Alignment:
Q  148 tgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||    
T  46183068 tgcgtgacttaagtcacgccgcgttagttaactaacgcataattttacacttgcgttatttaa 46183006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 51147421 - 51147359
Alignment:
Q  207 ttaagagcaattttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaatt 269  Q
    |||||| || ||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  51147421 ttaagaacatttttgggatggctgcagggcgcgagcgaaaagtgcaggggaaagagcagaatt 51147359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 25227385 - 25227438
Alignment:
Q  217 ttttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    |||| ||||||||||||| |||||| | ||||||||||||||||||||||||||    
T  25227385 ttttaggatggctgcaggacgcgagcgaaaagtgcagggggaagagcagaattc 25227438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 20513564 - 20513517
Alignment:
Q  163 acactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||| ||||||||||| || |||||| |||||||||||||||||||||    
T  20513564 acacagcgttagttaactatcgcatagttttacacttgcgttagttaa 20513517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 51815184 - 51815141
Alignment:
Q  167 tgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||    
T  51815184 tgcgttagttaactaatgcataattttacacttgcattagttaa 51815141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 25227326 - 25227375
Alignment:
Q  135 cggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacg 184  Q
    ||||||||||| ||  ||||||||||| || |||||||||||||||||||    
T  25227326 cggtttttacaggtatgtgacttaagttacgctgcgttagttaagtaacg 25227375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 6778736 - 6778776
Alignment:
Q  231 cagggcgcgagtgcaaagtgcagggggaagagcagaattct 271  Q
    ||||||||||| | |||||||||||||||||||| ||||||    
T  6778736 cagggcgcgagcgaaaagtgcagggggaagagcaaaattct 6778776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 53630307 - 53630347
Alignment:
Q  170 gttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||| |||||||| | ||||||||||||||||||||    
T  53630307 gttagttaactaacgcattaatttacacttgcgttagttaa 53630347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 103 - 271
Target Start/End: Original strand, 11660980 - 11661157
Alignment:
Q  103 agcgtgagttaactcacgcaagtgtnnnnnnncggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcg 202  Q
    ||||||| |||| ||||||||||||       |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11660980 agcgtgacttaagtcacgcaagtgtaaaaaatcggtttttacacgtgcatgacttaagtcacgctgcgttagttaagtaacgcataattttacacttgcg 11661079  T
Q  203 ttagtt---------aagagcaattttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattct 271  Q
    ||||||         ||| ||| |||||||| ||||||||||| | |||| ||||||| ||| ||||||||| |||||    
T  11661080 ttagttaactaacgcaagggcatttttgggagggctgcagggcacaagtgaaaagtgctgggtgaagagcagtattct 11661157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 39834157 - 39834084
Alignment:
Q  137 gtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||| |||| |||||||||| || |||||||||||||||||||||||||||||||||  ||||||||||    
T  39834157 gtttttacaggtgcttgacttaagttacgctgcgttagttaagtaacgcataattttacactaacgttagttaa 39834084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 11660886 - 11660827
Alignment:
Q  151 gtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||    
T  11660886 gtgacttaagtcatgttgcgttagttaagtaacacataattttacacttgcgttagttaa 11660827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 39834793 - 39834851
Alignment:
Q  212 agcaattttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    |||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  39834793 agcatttttgggatggttgcagggcgcgagcgaaaagtgcagggggaagagcagaattc 39834851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 20394189 - 20394253
Alignment:
Q  208 taagagcaattttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattctt 272  Q
    |||| ||| ||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  20394189 taagggcatttttgagatggctgcagggcgcgagcgaaaagtgcagggggaagagcaaaattctt 20394253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 23266736 - 23266784
Alignment:
Q  136 ggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacg 184  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||    
T  23266736 ggtttttacaggtgcgtgacttaagtcacgctgcgttagttaagtaacg 23266784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 21283873 - 21283802
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||| ||||| |||||||| || | ||||||||||| |||| |||| |||||||||||||||||||||    
T  21283873 ttttacacatgcgttacttaagtaacgcagcgttagttaactaacacatagttttacacttgcgttagttaa 21283802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 20394109 - 20394188
Alignment:
Q  104 gcgtgagttaactcacgcaagtgtnnnnnnncggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacg 184  Q
    ||||||||||||||||||||||||       ||||||||||| ||| | |||||||||||| ||| |||||||||||||||    
T  20394109 gcgtgagttaactcacgcaagtgtaaaaaa-cggtttttacaggtgtgcgacttaagtcacgctgtgttagttaagtaacg 20394188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 39834270 - 39834228
Alignment:
Q  22 agtttaatgtatccaggctgtgtatgtataactatgtatgcat 64  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  39834270 agtttaatgtatccaggttctgtatgtataactatgtatgcat 39834228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 23266794 - 23266847
Alignment:
Q  217 ttttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    |||| |||||||||||||||||||| | ||| |||||||||||||||| |||||    
T  23266794 ttttaggatggctgcagggcgcgagcgaaaaatgcagggggaagagcaaaattc 23266847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 40361781 - 40361829
Alignment:
Q  224 atggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattctt 272  Q
    |||||||||||||||||| | ||||||||||| |||||| |||||||||    
T  40361781 atggctgcagggcgcgagcgaaaagtgcagggtgaagagaagaattctt 40361829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 21713311 - 21713366
Alignment:
Q  217 ttttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattctt 272  Q
    |||||| ||||||||||||||||||   || |||||||| ||||||||||||||||    
T  21713311 ttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagcagaattctt 21713366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 39834068 - 39834014
Alignment:
Q  217 ttttgggatggctgcagggcgcgagtgcaaagtgcagggggaaga-gcagaattc 270  Q
    ||||| ||||||||||||||||||| | |||||||||||| |||| |||||||||    
T  39834068 ttttgagatggctgcagggcgcgagcgaaaagtgcaggggaaagaggcagaattc 39834014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 31825875 - 31825928
Alignment:
Q  217 ttttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    |||||| ||||||||||||||||||   || |||||||| ||||||||||||||    
T  31825875 ttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagcagaattc 31825928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 45864934 - 45864995
Alignment:
Q  149 gcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||| |||| |||| | |||||| |||| ||||||||| |||||||||||| ||||||||    
T  45864934 gcgtgagttaactcacgcagcgttacttaactaacgcatagttttacacttgcattagttaa 45864995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 54185590 - 54185651
Alignment:
Q  149 gcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||| |||| |||| | |||||| |||| || |||||| |||||||||||||||||||||    
T  54185590 gcgtgagttaactcacgcagcgttacttaactagcgcatagttttacacttgcgttagttaa 54185651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 23266242 - 23266178
Alignment:
Q  208 taagagcaattttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattctt 272  Q
    |||| ||| |||||||||||||||||||| |||| | ||||||||  || ||||||| |||||||    
T  23266242 taagtgcatttttgggatggctgcagggcacgagcgaaaagtgcaaaggaaagagcaaaattctt 23266178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 23266275 - 23266243
Alignment:
Q  152 tgacttaagtcacactgcgttagttaagtaacg 184  Q
    ||||||||||||| |||||||||||||||||||    
T  23266275 tgacttaagtcacgctgcgttagttaagtaacg 23266243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 42040516 - 42040460
Alignment:
Q  154 acttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||||| |  |||||||||| |||| |||| |||||||| ||||||||||||    
T  42040516 acttaagtcacgccacgttagttaactaacacatagttttacacgtgcgttagttaa 42040460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 36235 - 36370
Alignment:
Q  137 gtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagtt---------aagagcaattttgggatgg 227  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||         ||| ||| |||||||||||    
T  36235 gtttttacacgtgtgtgacttaagtcacgctgcgttagttaagtaacgcataattttacacttgcgttagttaactaacgcaagggcatttttgggatgg 36334  T
Q  228 ctgcagggcgcgagtgcaaagtgcagggggaagagc 263  Q
    ||||||| |||||||| ||||||| ||| |||||||    
T  36335 ctgcaggacgcgagtgaaaagtgctgggtgaagagc 36370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 32879728 - 32879620
Alignment:
Q  103 agcgtgagttaactcacgcaagtgtnnnnnnncggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcg 202  Q
    ||||||| |||| ||||||||||||       |||||||||||||||  ||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  32879728 agcgtgacttaagtcacgcaagtgtaaaaaaacggtttttacacgtgtttgacttaagtcacgctgcgttagttaagtaacacataattttacacttgcg 32879629  T
Q  203 ttagttaag 211  Q
    |||||||||    
T  32879628 ttagttaag 32879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 5741556 - 5741604
Alignment:
Q  224 atggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattctt 272  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  5741556 atggctgcagggcgcgagcgaaaagtgcagggtgaagagcagaattctt 5741604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 9929669 - 9929598
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||| ||||| |||||||| || | ||||||||||| |||| |||| |||||||||||||||| ||||    
T  9929669 ttttacacatgcgttacttaagtaacgcagcgttagttaactaacacatagttttacacttgcgttaattaa 9929598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 4410213 - 4410279
Alignment:
Q  144 cacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||| ||| |||||||| |||| ||||||||||| |||  |||| |||||||||||||||||||||    
T  4410213 cacgtacgttacttaagtgacacagcgttagttaactaatacatagttttacacttgcgttagttaa 4410279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 35018741 - 35018783
Alignment:
Q  168 gcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||    
T  35018741 gcgttagttaaataacgcatagttttacacttgcgtgagttaa 35018783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 7527068 - 7527109
Alignment:
Q  169 cgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||||| |||| ||||||||||||||||||| ||||||    
T  7527068 cgttagttaactaacacataattttacacttgcgtgagttaa 7527109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 7919335 - 7919375
Alignment:
Q  170 gttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||| |||||||||| ||| ||||||||||||||||    
T  7919335 gttagttaactaacgcataaattttcacttgcgttagttaa 7919375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 32879699 - 32879739
Alignment:
Q  138 tttttacacgtgcgtgacttaagtcacactgcgttagttaa 178  Q
    ||||||||| ||||||||||||||||| |||||| ||||||    
T  32879699 tttttacacttgcgtgacttaagtcacgctgcgtgagttaa 32879739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 3194546 - 3194620
Alignment:
Q  136 ggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  3194546 ggtttttacacgtgtgtgacttaagtcacgttgcgttagttaagtaatgcataattttatacttgcgttagttaa 3194620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 3194420 - 3194473
Alignment:
Q  4 tgttggactgataataacagtttaatgtatccaggctgtgtatgtataactatg 57  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  3194420 tgttggaatgataataatagtttaatgtatccaggttgtgtatgtataactatg 3194473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 24994550 - 24994617
Alignment:
Q  143 acacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||| |||||||||||||||||  |||||||||||||||| ||| || || |||||||||||| ||||    
T  24994550 acacttgcgtgacttaagtcacgttgcgttagttaagtaatgcagaaattaacacttgcgttacttaa 24994617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 2785003 - 2784955
Alignment:
Q  224 atggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattctt 272  Q
    ||||||||||||| |||| | ||||||||||| ||||||||||||||||    
T  2785003 atggctgcagggcacgagcgaaaagtgcagggagaagagcagaattctt 2784955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 14097516 - 14097587
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||| ||||| ||||||||  | |  |||||||||| ||| |||||| ||||||||||||||||||||    
T  14097516 ttttacacatgcgttacttaagtagcgcatcgttagttaactaatgcataaatttacacttgcgttagttaa 14097587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 20669856 - 20669899
Alignment:
Q  227 gctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  20669856 gctgcagggcgcgagcgaaaagtgcagggggaagagcaaaattc 20669899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 39047289 - 39047331
Alignment:
Q  168 gcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||    
T  39047289 gcgttagttaactaacgcatagtttttcacttgcgttagttaa 39047331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 3194122 - 3194077
Alignment:
Q  137 gtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaa 182  Q
    ||||||||| |||||||||||||| ||| |||| ||||||||||||    
T  3194122 gtttttacaggtgcgtgacttaagccacgctgcattagttaagtaa 3194077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 43275788 - 43275515
Alignment:
Q  1 aagtgttggactgataataacagtttaatgtatccaggctgtgtatgtataactatgtatgcatataagcaaattcttgaatatatgcatgtgattgaaa 100  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| | |   |  ||||  |  | || |  |  | ||||    
T  43275788 aagtgttggaatgataataatagtttaatgtatccaggttgtgtatgtataactatgtatacatgtgattca--tctttcacgtttgaaaat--tggaaa 43275693  T
Q  101 ctagcgtgagttaactcacgcaagtgtnnnnnnncggtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttg 200  Q
     | ||||||||||| ||| ||||||||       ||||||||| |||||||||| ||||||||  |||||||||||||||| |  |||||||||  ||||    
T  43275692 ttggcgtgagttaattcaggcaagtgt-aaaaaacggtttttatacgtgcgtgatttaagtcatgctgcgttagttaagtagcatataattttatccttg 43275594  T
Q  201 cgttagt---------taagagcaattttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    |||||||         |||| ||| |||||| |||||||||||||||||| | |||||||||||||| |||||||||||    
T  43275593 cgttagtaaactaacgtaagggcatttttggaatggctgcagggcgcgagcgaaaagtgcagggggatgagcagaattc 43275515  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 25868058 - 25868011
Alignment:
Q  223 gatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  25868058 gatggctgcagggcgcgagcgaaaagtgcagggggaagagcaggattc 25868011  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 7634107 - 7634157
Alignment:
Q  224 atggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattcttct 274  Q
    |||||||||||||||||||| |||| |||||| |||||||| |||||||||    
T  7634107 atggctgcagggcgcgagtgaaaagagcagggtgaagagcataattcttct 7634157  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 40018174 - 40018113
Alignment:
Q  149 gcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||| |||||||| || | || |||||||| ||||||||| |||||||||||||||||||||    
T  40018174 gcgttacttaagtaacgcagcattagttaactaacgcatagttttacacttgcgttagttaa 40018113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 29195309 - 29195267
Alignment:
Q  168 gcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||    
T  29195309 gcgttagttaactaacgcatagtttttcacttgcgttagttaa 29195267  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 17854772 - 17854731
Alignment:
Q  137 gtttttacacgtgcgtgacttaagtcacactgcgttagttaa 178  Q
    |||||||||| ||||||||||| |||||||||||| ||||||    
T  17854772 gtttttacacatgcgtgacttaggtcacactgcgtgagttaa 17854731  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 6401837 - 6401766
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||| ||||| ||||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||    
T  6401837 ttttacacttgcgttacttaagtcacgctgcgttagttaactaacacataattttatacttgcgttagttaa 6401766  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 187231 - 187302
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||| ||| | |||||||| ||   ||||| ||||| ||||||||| |||||||||||||||||||||    
T  187231 ttttacacatgcattacttaagtaacgtagcgtttgttaactaacgcatagttttacacttgcgttagttaa 187302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 31116300 - 31116229
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||| || ||||| |||||||| || |  |||||||||| |||| ||||| ||||||||||||||||||||    
T  31116300 ttttatacttgcgttacttaagtgacgcaacgttagttaactaacacataaatttacacttgcgttagttaa 31116229  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 19380221 - 19380263
Alignment:
Q  168 gcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||||| |||||||||  ||||||||||||||||||||    
T  19380221 gcgttagttaactaacgcatacatttacacttgcgttagttaa 19380263  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 42882501 - 42882455
Alignment:
Q  224 atggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattc 270  Q
    |||||||||||||| ||| | ||||||||||| ||||||||||||||    
T  42882501 atggctgcagggcgtgagcgaaaagtgcagggtgaagagcagaattc 42882455  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 33710901 - 33710941
Alignment:
Q  138 tttttacacgtgcgtgacttaagtcacactgcgttagttaa 178  Q
    ||||||||| ||||||||||||||||| |||||| ||||||    
T  33710901 tttttacacatgcgtgacttaagtcacgctgcgtgagttaa 33710941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 432913 - 432975
Alignment:
Q  148 tgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||    
T  432913 tgcgtgacttaagtcacgtcgcgttagttaactaacgcataattttacacttgcgttagttaa 432975  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 31877484 - 31877428
Alignment:
Q  154 acttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||||   |||||||||||| |||||||||||||||||||||||||||||||    
T  31877484 acttaagtcatgttgcgttagttaactaacgcataattttacacttgcgttagttaa 31877428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 12629787 - 12629858
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||| ||||||||||| ||||||||| || |||||| ||||||| |||||||||| || |||||||||    
T  12629787 ttttacacttgcgtgacttaggtcacactgtgtaagttaactaacgcaaaattttacacatgtgttagttaa 12629858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 24504131 - 24504202
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||| ||||||||||||| |||||||||| |||||| |||| || |||||||||| |||||| |||||    
T  24504131 ttttacacttgcgtgacttaagccacactgcgtgagttaattaacacagaattttacacatgcgtttgttaa 24504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 47442270 - 47442315
Alignment:
Q  226 ggctgcagggcgcgagtgcaaagtgcagggggaagagcagaattct 271  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||    
T  47442270 ggctgcagggcgcgagtgaaaagtgcagggggatgagcagaattct 47442315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 23245940 - 23246051
Alignment:
Q  168 gcgttagttaagtaacgcataattttacacttgcgttagttaa---------gagcaattttgggatggctgcagggcgcgagtgcaaagtgcaggggga 258  Q
    ||||||||||||||||||| | ||| |||||| ||||||||||         | ||| |||||| |||||||||||| ||||| | ||||||||| ||||    
T  23245940 gcgttagttaagtaacgcagagtttaacacttacgttagttaactagtgcaagggcatttttggaatggctgcagggtgcgagcgaaaagtgcagtggga 23246039  T
Q  259 agagcagaattc 270  Q
    ||||||||||||    
T  23246040 agagcagaattc 23246051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 36653337 - 36653281
Alignment:
Q  154 acttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||| |||| ||| ||||||||| |||| || |||||||||||||||||||||||    
T  36653337 acttaaatcacgctgtgttagttaactaacacacaattttacacttgcgttagttaa 36653281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 30859805 - 30859755
Alignment:
Q  217 ttttgggatggctgcagggcgcgagtgcaaagtgcagggggaagagcagaa 267  Q
    |||||| ||||||||||||||||||||    ||||||||||||||||||||    
T  30859805 ttttggaatggctgcagggcgcgagtgttttgtgcagggggaagagcagaa 30859755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 30665642 - 30665686
Alignment:
Q  166 ctgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||| |||||| ||||||| ||||||||||||||| |||||||    
T  30665642 ctgcgtgagttaactaacgcagaattttacacttgcgctagttaa 30665686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 185517 - 185444
Alignment:
Q  137 gtttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||||  ||||| |||||||| || | ||||||||||| ||||||||| |||||||||||||||||||||    
T  185517 gtttttacatatgcgttacttaagtaacgcagcgttagttaactaacgcatagttttacacttgcgttagttaa 185444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 28651 - 28607
Alignment:
Q  166 ctgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  28651 ctgcgttagttaactaacgcataattttacacttgcgttagttaa 28607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 7859 - 7930
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||| ||||| ||||||||  | |  |||||||||| ||| |||||| ||||||||||||||||||||    
T  7859 ttttacacatgcgttacttaagtagcgcatcgttagttaactaatgcataaatttacacttgcgttagttaa 7930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 33592 - 33633
Alignment:
Q  169 cgttagttaagtaacgcataattttacacttgcgttagttaa 210  Q
    |||||||||| ||||||||  |||||||||||||||||||||    
T  33592 cgttagttaactaacgcattgttttacacttgcgttagttaa 33633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 13636 - 13604
Alignment:
Q  139 ttttacacgtgcgtgacttaagtcacactgcgt 171  Q
    |||||||| ||||||||||||||||||||||||    
T  13636 ttttacacttgcgtgacttaagtcacactgcgt 13604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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